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Merge branch 'main' of github.com:dutchconnectomelab/CATO-docs
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@SiemondeLange
SiemondeLange committed Apr 19, 2023
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<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0, shrink-to-fit=no">
<title>CATO</title>
<title>CATO - Connectome reconstruction software</title>
<meta name="twitter:description" content="An integrative and modular software package for the reconstruction of structural and functional brain connectivity based on diffusion weighted imaging (DWI) and resting-state functional MRI (rs-fMRI) data.">
<meta name="twitter:title" content="CATO: Structural and functional connectivity reconstruction">
<meta name="twitter:card" content="summary_large_image">
<meta name="description" content="CATO is a modular, end-to-end, software package for the reconstruction of structural and functional brain connectivity based on DWI or rs-fMRI data.">
<link rel="icon" type="image/png" sizes="32x30" href="assets/img/CATO_32px.png">
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</head>

<body>
<div>
<div class="header-blue" style="background: rgb(255,255,255);">
<nav class="navbar navbar-light navbar-expand-md navigation-clean">
<div class="container"><button data-toggle="collapse" class="navbar-toggler" data-target="#navcol-1"><span class="sr-only">Toggle navigation</span><span class="navbar-toggler-icon"></span></button>
<div class="collapse navbar-collapse" id="navcol-1"><img src="assets/img/CATO_logo.svg" style="max-height: 3rem;">
<div class="collapse navbar-collapse" id="navcol-1"><img src="assets/img/CATO_logo.svg?h=25757ca1baab0165e58745494405432b" style="max-height: 3rem;">
<ul class="navbar-nav ml-auto">
<li class="nav-item"><a class="nav-link" href="docs/installation.html">Download</a></li>
<li class="nav-item"><a class="nav-link" href="http://www.dutchconnectomelab.nl">Dutch Connectome Lab&nbsp;<i class="fa fa-external-link" style="color: rgba(0,0,0,0.3);font-size: 0.75rem;"></i></a></li>
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<h1 class="text-body">Structural and functional<br>connectome reconstruction</h1>
<p class="text-dark">CATO is a modular software package for the reconstruction of brain connectivity based on DWI or rs-fMRI data.</p><a href="docs/installation.html"><button class="btn btn-dark btn-lg text-dark action-button" type="button">Get started with CATO</button></a>
</div>
<div class="col align-self-end"><img src="assets/img/header_matrix.svg"></div>
<div class="col align-self-end"><img src="assets/img/header_matrix.svg?h=8f6d008b1a1553d201c2cc583f19210a"></div>
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Expand All @@ -61,7 +61,7 @@ <h1 class="text-body">Structural and functional<br>connectome reconstruction</h1
<div class="col-9 mx-auto">
<h2 class="text-center">Connectome reconstruction toolbox</h2>
<p class="text-center">CATO is an integrative and modular software package for the reconstruction of structural and functional brain connectivity based on diffusion weighted imaging and resting-state functional MRI data. CATO enables researchers to run end-to-end reconstructions from MRI data to structural and functional connectome maps, customize their analysis and utilize different software packages during the data preprocessing. <br></p>
<p class="text-center">CATO is introduced in:<br><a href="https://www.biorxiv.org/content/10.1101/2021.05.31.446012" target="_blank"><em>Structural and functional connectivity reconstruction with CATO</em></a><br>de Lange SC, van den Heuvel MP, 2021<br><br></p><img src="assets/img/methods.svg" width="100%">
<p class="text-center">CATO is introduced in:<br><a href="https://doi.org/10.1016/j.neuroimage.2023.120108"><em><span style="color: var(--color-accent-fg); background-color: transparent;">Structural and functional connectivity reconstruction with CATO -&nbsp;A Connectivity Analysis TOolbox</span></em></a>&nbsp;<br>Siemon C. de Lange, Koen Helwegen, and Martijn P. van den Heuvel -&nbsp;<em>NeuroImage</em>, 2023</p><img src="assets/img/methods.svg?h=4568829c04afb4664db2651d133f45ad" width="100%">
<p class="text-center">CATO is a reconstruction toolbox useful for researchers at all technical levels including both easy to use default parameters and example scripts as well as advanced options to customize the reconstruction steps.&nbsp;&nbsp;</p>
</div>
</div>
Expand All @@ -77,15 +77,15 @@ <h2 class="text-center">End-to-end reconstruction pipelines</h2>
</div>
</div>
<div class="row features">
<div class="col-md-9 col-xl-4 mx-auto item"><img class="icon" src="assets/img/icon_modular.svg" style="width: 3rem;">
<div class="col-md-9 col-xl-4 mx-auto item"><img class="icon" src="assets/img/icon_modular.svg?h=ce7acd9f8d09a14088998f4ca6cf6657" style="width: 3rem;">
<h3 class="name">Modular</h3>
<p class="description">The modular design of CATO enables researchers to run end-to-end reconstructions from raw MRI data to connectomes, customize their analysis and/or utilize other software packages during the data processing.</p>
<p class="description">The modular design of CATO enables researchers to run end-to-end reconstructions from raw MRI data to connectomes, customize their analysis and/or utilize other software packages such as FreeSurfer and FSL during the data processing.</p>
</div>
<div class="col-md-9 col-xl-4 mx-auto item"><img class="icon" src="assets/img/icon_matlab.svg" style="width: 3rem;max-height: 3rem;">
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<h3 class="name">MATLAB and executable</h3>
<p class="description">CATO is available both as a package for MATLAB and as a compiled standalone executable for use on e.g. high-performance cluster computers.</p>
</div>
<div class="col-md-9 col-xl-4 mx-auto item"><img class="icon" src="assets/img/icon_cc.svg" style="width: 3rem;">
<div class="col-md-9 col-xl-4 mx-auto item"><img class="icon" src="assets/img/icon_cc.svg?h=f9149d95d5fda12b94062d5adce3d443" style="width: 3rem;">
<h3 class="name">Free open-source software</h3>
<p class="description">CATO is open-source and free-to-use under the MIT License. Source code and developments are available on the <a href="https://github.com/dutchconnectomelab/CATO">GitHub repository</a>.</p>
</div>
Expand All @@ -102,7 +102,7 @@ <h2>Getting started</h2>
</div>
</div>
<div class="col-sm-4 d-xl-flex align-items-xl-end">
<div style="position: relative;"><img class="img-fluid" src="assets/img/screenshot_CATO_matlab.png" style="padding-left: 6rem;"><img class="img-fluid" src="assets/img/screenshot_CATO.png" style="/*margin-bottom: 1rem;*/position: absolute;/*top: 33%;*/left: 0;/*height: 75%;*/bottom: 10%;/*width: 75%;*/padding-right: 6rem;"></div>
<div style="position: relative;"><img class="img-fluid" src="assets/img/screenshot_CATO_matlab.png?h=dec213924b8e976ed5f9a3bca288bb48" style="padding-left: 6rem;"><img class="img-fluid" src="assets/img/screenshot_CATO.png?h=3f9e91b30693ca79abf6ad9807e715ff" style="/*margin-bottom: 1rem;*/position: absolute;/*top: 33%;*/left: 0;/*height: 75%;*/bottom: 10%;/*width: 75%;*/padding-right: 6rem;"></div>
</div>
</div>
</div>
Expand Down Expand Up @@ -137,25 +137,25 @@ <h3>About</h3>
</ul>
</div>
<div class="col-lg-3 align-self-end item social">
<p class="copyright">Dutch Connectome Lab © 2022</p>
<p class="copyright">Dutch Connectome Lab © 2023</p>
</div>
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