Workflow file for this run
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| name: C++/Python Tests | |
| on: | |
| push: | |
| merge_group: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| build: | |
| name: C++ tests Ubuntu | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| python-version: [ "3.9" ] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v3 | |
| - run: git fetch --prune --unshallow | |
| - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV | |
| - name: Set up AMICI C++ libraries | |
| uses: ./.github/actions/setup-amici-cpp | |
| - name: C++ tests | |
| run: scripts/run-cpp-tests.sh | |
| - name: Codecov CPP | |
| uses: codecov/[email protected] | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: coverage.info | |
| flags: cpp | |
| fail_ci_if_error: true | |
| - name: Run sonar-scanner | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
| run: | | |
| sonar-scanner \ | |
| -Dsonar.cfamily.build-wrapper-output=bw-output \ | |
| -Dsonar.projectVersion="$(git describe --abbrev=4 --dirty=-dirty --always --tags | tr -d '\n')" | |
| osx: | |
| name: Tests OSX | |
| runs-on: macos-latest | |
| steps: | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - uses: actions/checkout@v3 | |
| - run: git fetch --prune --unshallow | |
| - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV | |
| - run: echo "BNGPATH=${AMICI_DIR}/ThirdParty/BioNetGen-2.7.0" >> $GITHUB_ENV | |
| # Ensure CMake is using the python version that we will use for the python tests later on | |
| - run: echo "PYTHON_EXECUTABLE=${Python3_ROOT_DIR}/bin/python3" >> $GITHUB_ENV | |
| # install amici dependencies | |
| - name: homebrew | |
| run: | | |
| brew install hdf5 swig gcc cppcheck libomp boost \ | |
| && brew ls -v boost \ | |
| && brew ls -v libomp \ | |
| && echo LDFLAGS="-L/usr/local/lib/ -L/usr/local/Cellar/boost/1.81.0_1/lib/" >> $GITHUB_ENV \ | |
| && echo CPPFLAGS="-I /usr/local/Cellar/boost/1.81.0_1/include/" >> $GITHUB_ENV | |
| - name: Build AMICI | |
| run: scripts/buildAll.sh | |
| - name: Install python package | |
| run: scripts/installAmiciSource.sh | |
| - name: cppcheck | |
| run: scripts/run-cppcheck.sh | |
| - name: Python tests | |
| run: scripts/run-python-tests.sh | |
| - name: C++ tests | |
| run: scripts/run-cpp-tests.sh |