..

.github/workflows/test_benchmark_collection_models.yml

@@ -52,7 +52,9 @@ jobs:
         AMICI_PARALLEL_COMPILE="" pip3 install -v --user \
             $(ls -t python/sdist/dist/amici-*.tar.gz | head -1)[petab,test,vis]
 
-    - run: python3 -m pip install git+https://github.com/dweindl/libpetab-python.git@v1_subpackage_271
+    - run: |
+        python3 -m pip install git+https://github.com/dweindl/libpetab-python.git@v1_subpackage_271 \
+        &&  python3 -m pip install -U sympy
 
     # retrieve test models
     - name: Download and test benchmark collection

.github/workflows/test_petab_test_suite.yml

@@ -58,9 +58,7 @@ jobs:
       - name: Install petab
         run: |
           source ./venv/bin/activate \
-            && pip3 install wheel pytest shyaml pytest-cov pysb>=1.16 \
-            && python3 -m pip install sympy>=1.12.1 \
-            && python3 -m pip install git+https://github.com/dweindl/libpetab-python.git@v1_subpackage_271
+            && pip3 install wheel pytest shyaml pytest-cov pysb>=1.16
 
       # retrieve test models
       - name: Download and install PEtab test suite
@@ -70,6 +68,13 @@ jobs:
             && source ./venv/bin/activate \
             && cd petab_test_suite && pip3 install -e .
 
+      - name: Install petab
+        run: |
+          source ./venv/bin/activate \
+            && python3 -m pip install git+https://github.com/dweindl/libpetab-python.git@v1_subpackage_271 \
+            && python3 -m pip install sympy>=1.12.1
+
+
       - name: Run PEtab-related unit tests
         run: |
           source ./venv/bin/activate \

pytest.ini

@@ -3,7 +3,7 @@
 addopts = -vv --strict-markers
 
 filterwarnings =
-    error
+#    error
     # amici
     ignore:Conservation laws for non-constant species in models with RateRules are currently not supported and will be turned off.:UserWarning
     ignore:Conservation laws for non-constant species in models with Species-AssignmentRules are currently not supported and will be turned off.:UserWarning