Re-enable gradient check for Fujita_SciSignal2010

dweindl · Oct 24, 2024 · e2587ef · e2587ef
1 parent f9699aa
commit e2587ef
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/tests/benchmark-models/test_petab_benchmark.py b/tests/benchmark-models/test_petab_benchmark.py
@@ -62,7 +62,6 @@
     "Smith_BMCSystBiol2013",
     # excluded due to excessive numerical failures
     "Crauste_CellSystems2017",
-    "Fujita_SciSignal2010",
 }
 problems_for_gradient_check = list(sorted(problems_for_gradient_check))
 
@@ -177,6 +176,10 @@ class GradientCheckSettings:
 settings["Brannmark_JBC2010"] = GradientCheckSettings(
     ss_sensitivity_mode=amici.SteadyStateSensitivityMode.integrationOnly,
 )
+settings["Fujita_SciSignal2010"] = GradientCheckSettings(
+    atol_check=1e-10,
+    rtol_check=5e-4,
+)
 settings["Giordano_Nature2020"] = GradientCheckSettings(
     atol_check=1e-6, rtol_check=1e-3, rng_seed=1
 )