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dweindl committed Nov 20, 2023
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14 changes: 10 additions & 4 deletions documentation/python_installation.rst
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Expand Up @@ -13,7 +13,7 @@ Installation of the AMICI Python package has the following prerequisites:
* CBLAS compatible BLAS library
(e.g., OpenBLAS, CBLAS, Atlas, Accelerate, Intel MKL)
* a C++17 compatible C++ compiler and a C compiler
(e.g., g++, clang, Intel C++ compiler, mingw)
(e.g., g++>=9.1, clang>=12, Intel C++ compiler, mingw)

If these requirements are fulfilled and all relevant paths are setup properly,
AMICI can be installed using:
Expand Down Expand Up @@ -44,6 +44,9 @@ Install the AMICI dependencies via ``apt``
# optionally for HDF5 support:
sudo apt install libhdf5-serial-dev
# optionally for boost support (thread-specific CPU times, extended math functions, serialization)
libboost-chrono-dev libboost-math-dev libboost-serialization-dev
Install AMICI:

.. code-block:: bash
Expand Down Expand Up @@ -88,13 +91,13 @@ Alternatively:

.. code-block:: bash
sudo pacman -Si python swig openblas gcc hdf5 boost-libs
sudo pacman -Si python swig openblas gcc hdf5 boost-libs
2. Upgrade installed packages if required mininum versions are not satisfied for AMICI installation.

.. code-block:: bash
sudo pacman -Su python swig openblas gcc hdf5 boost-libs
sudo pacman -Su python swig openblas gcc hdf5 boost-libs
3. Install AMICI:

Expand All @@ -116,7 +119,10 @@ Install the AMICI dependencies using homebrew:
brew install hdf5
# optionally for parallel simulations:
brew install libomp
brew install libomp && export OpenMP_ROOT=$(brew --prefix)/opt/libomp"
# optionally for boost support (thread-specific CPU times, extended math functions, serialization)
brew install boost && export BOOST_ROOT=$(brew --prefix)/opt/boost
Install AMICI:
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