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Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829
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README.TXT VELVET SOURCE March 28 2008 Daniel Zerbino NOTE: The PDF manual in this directory contains all the information contained in this text file, plus much more! > SUMMARY * A/ REQUIREMENTS * B/ COMPILING INSTRUCTIONS * C/ WHERE IS THE MANUAL? ---------------------------------------------------------------------------------- A/ REQUIREMENTS Velvet should function on any standard 64bit Linux environment with gcc. A good amount of physical memory (12GB to start with, more is no luxury) is recommended. ---------------------------------------------------------------------------------- B/ COMPILING INSTRUCTIONS Normally, with a GNU environment, just type: > make For colorspace Velvet replace that command with > make color Otherwise compile each *.c file separately, then execute the default instructions at the top of Makefile. ---------------------------------------------------------------------------------- C/ WHERE IS THE MANUAL? If you cannot find the PDF manual in the source directory (probably because you downloaded Velvet through git), you can simply compile it: > make doc
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Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829
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