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Merge pull request #20639 from verdurin/20240524154544_new_pr_Seurat510
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{bio}[foss/2023a] Seurat v5.1.0 w/ R 4.3.2
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bedroge authored May 28, 2024
2 parents 7f6427e + 45bfc5b commit 042dc44
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76 changes: 76 additions & 0 deletions easybuild/easyconfigs/s/Seurat/Seurat-5.1.0-foss-2023a-R-4.3.2.eb
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easyblock = 'Bundle'

name = 'Seurat'
version = '5.1.0'
versionsuffix = '-R-%(rver)s'

homepage = 'https://satijalab.org/seurat'
description = "Seurat is an R package designed for QC, analysis, and exploration of single cell RNA-seq data."

toolchain = {'name': 'foss', 'version': '2023a'}

dependencies = [
('R', '4.3.2'),
('R-bundle-Bioconductor', '3.18', versionsuffix),
]

exts_defaultclass = 'RPackage'
exts_default_options = {
'sources': ['%(name)s_%(version)s.tar.gz'],
'source_urls': [
'https://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive
'https://cran.r-project.org/src/contrib/', # current version of packages
'https://cran.freestatistics.org/src/contrib', # mirror alternative for current packages
],
}

exts_list = [
('Matrix', '1.6-4', {
'checksums': ['70ca7bdaece68d4837da0523d067e1553947c3c81b0b55206223bb647617bb01'],
}),
('sp', '2.1-4', {
'checksums': ['e185e7fb61d2d7dbc50fd765a93e170fa778083a653588db1f5e99d019479f0a'],
}),
('SeuratObject', '5.0.2', {
'checksums': ['ded30d21f445b7e353fe4a0c4954d45ad19fbe162615d9addf6732f9318ba0cf'],
}),
('sctransform', '0.4.1', {
'checksums': ['5f6be7f8be543e4c32c8007207b603a750881459370b7bb5afd63e8c8fabf171'],
}),
('uwot', '0.2.2', {
'checksums': ['d9938c43d29530d4b36d1b2649cc679b09945a740db2cd3a266242b1aa9a6cd1'],
}),
('spatstat.utils', '3.0-1', {
'checksums': ['cba1c7806564fd9145ca15edf77233d6ba5609f0989f7812221f5fc1ece0b91a'],
}),
('spatstat.data', '3.0-0', {
'checksums': ['cff9058a88489020a4a05b9576cd452f37fa9b42084873c474d06931f5187057'],
}),
('spatstat.geom', '3.0-3', {
'checksums': ['6e5b56c60e774a0cdcaa5a8ffde071225f233832446a341588bd8a7840913c84'],
}),
('spatstat.random', '3.0-1', {
'checksums': ['938c845c063b8781bf894c0a67537e7b2a7c425a4beba4a95ec9d2c37b43e5b6'],
}),
('spatstat.sparse', '3.0-0', {
'checksums': ['99be0a3c7592760fdf1668dc0811f75ed91c400390d1ecc3d5e643255f501ad2'],
}),
('spatstat.explore', '3.0-5', {
'checksums': ['9f438a12fac3f3e1d0bd550b1393c1e5732be694517b0878db09da557d6dc862'],
}),
('scattermore', '1.2', {
'checksums': ['5534a87b0bdd1375f0fbffc1a5c980ad64e33a108435a67469b8324b580602d1'],
}),
(name, version, {
'checksums': ['adcfb43d7a8cc55eaa7a0954a082ac95e14059a82901913379bfec115e224d59'],
}),
]

sanity_check_paths = {
'files': [],
'dirs': [name],
}

modextrapaths = {'R_LIBS_SITE': ''}

moduleclass = 'bio'

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