Merge pull request #20633 from SebastianAchilles/20240524141255_new_p…

…r_Doxygen1110

{devel,math}[GCCcore/13.3.0] Doxygen v1.11.0, Eigen v3.4.0, GDRCopy v2.4.1, ...

easybuild/easyconfigs/d/Doxygen/Doxygen-1.11.0-GCCcore-13.3.0.eb

@@ -0,0 +1,41 @@
+easyblock = 'CMakeMake'
+
+name = 'Doxygen'
+version = '1.11.0'
+
+homepage = 'https://www.doxygen.org'
+description = """
+ Doxygen is a documentation system for C++, C, Java, Objective-C, Python,
+ IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some
+ extent D.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+
+source_urls = [SOURCEFORGE_SOURCE]
+sources = ['%(namelower)s-%(version)s.src.tar.gz']
+checksums = ['c9edfdf8c5f3e8bee0c4c967850caead27099883ee7ff8b11044e6d63faf3607']
+
+builddependencies = [
+    ('binutils', '2.42'),
+    ('Bison', '3.8.2'),
+    ('CMake', '3.29.3'),
+    ('flex', '2.6.4'),
+    ('pkgconf', '2.2.0'),
+    ('Python', '3.12.3'),
+]
+
+dependencies = [
+    ('libiconv', '1.17'),
+]
+
+configopts = "-DICONV_DIR=$EBROOTLIBICONV -DICONV_IN_GLIBC=OFF"
+
+sanity_check_paths = {
+    'files': ["bin/doxygen"],
+    'dirs': [],
+}
+
+sanity_check_commands = ["doxygen --help"]
+
+moduleclass = 'devel'

easybuild/easyconfigs/e/Eigen/Eigen-3.4.0-GCCcore-13.3.0.eb

@@ -0,0 +1,21 @@
+name = 'Eigen'
+version = '3.4.0'
+
+homepage = 'https://eigen.tuxfamily.org'
+description = """Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers,
+ and related algorithms."""
+
+# only includes header files, but requires CMake so using non-system toolchain
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+
+source_urls = ['https://gitlab.com/libeigen/eigen/-/archive/%(version)s']
+sources = [SOURCELOWER_TAR_BZ2]
+checksums = ['b4c198460eba6f28d34894e3a5710998818515104d6e74e5cc331ce31e46e626']
+
+# using CMake built with GCCcore to avoid relying on the system compiler to build it
+builddependencies = [
+    ('binutils', '2.42'),  # to make CMake compiler health check pass on old systems
+    ('CMake', '3.29.3'),
+]
+
+moduleclass = 'math'

easybuild/easyconfigs/g/GDRCopy/GDRCopy-2.4.1-GCCcore-13.3.0.eb

@@ -0,0 +1,52 @@
+easyblock = 'ConfigureMake'
+
+name = 'GDRCopy'
+version = '2.4.1'
+
+homepage = 'https://github.com/NVIDIA/gdrcopy'
+description = "A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology."
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+toolchainopts = {'pic': True}
+
+github_account = 'NVIDIA'
+source_urls = [GITHUB_SOURCE]
+sources = ['v%(version)s.tar.gz']
+checksums = ['faa7e816e9bad3301e53d6721457f7ef5ab42b7aa3b01ffda51f8e5620bb20ed']
+
+builddependencies = [
+    ('binutils', '2.42'),
+    ('Autotools', '20231222'),
+    ('pkgconf', '2.2.0'),
+]
+
+build_info_msg = """This easyconfig only installs the library of GDRCopy. Please keep in mind
+that GDRCopy also needs the following kernel modules at runtime:
+
+1. Kernel module for GDRCopy: improves Host to GPU communication
+   https://github.com/NVIDIA/gdrcopy
+   RPM: 'gdrcopy-kmod', DEB: 'gdrdrv-dkms'
+   Requirements: version of GDRCopy kernel module (gdrdrv.ko) >= 2.0
+
+2. (optional) Kernel module for GPUDirect RDMA: improves GPU to GPU communication
+   https://github.com/Mellanox/nv_peer_memory
+   RPM: 'nvidia_peer_memory'
+   Requirements: Mellanox HCA with MLNX_OFED 2.1
+
+These kernel modules are not listed as system dependencies to lower the system
+requirements to build this easyconfig, as they are not needed for the build."""
+
+skipsteps = ['configure']
+
+local_envopts = "prefix=%(installdir)s"
+prebuildopts = "PATH=$PATH:/sbin "  # ensures that ldconfig is found
+buildopts = "config lib %s" % local_envopts
+install_cmd = "make lib_install"
+installopts = local_envopts
+
+sanity_check_paths = {
+    'files': ['lib/libgdrapi.%s' % SHLIB_EXT],
+    'dirs': ['include'],
+}
+
+moduleclass = 'lib'

easybuild/easyconfigs/g/GMP/GMP-6.3.0-GCCcore-13.3.0.eb

@@ -0,0 +1,40 @@
+easyblock = 'ConfigureMake'
+
+name = 'GMP'
+version = '6.3.0'
+
+homepage = 'https://gmplib.org/'
+description = """
+ GMP is a free library for arbitrary precision arithmetic, operating on signed
+ integers, rational numbers, and floating point numbers.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+toolchainopts = {'precise': True, 'pic': True}
+
+source_urls = ['https://ftp.gnu.org/gnu/%(namelower)s']
+sources = [SOURCELOWER_TAR_BZ2]
+checksums = ['ac28211a7cfb609bae2e2c8d6058d66c8fe96434f740cf6fe2e47b000d1c20cb']
+
+builddependencies = [
+    ('Autotools', '20231222'),
+    ('binutils', '2.42'),
+]
+
+# enable C++ interface
+configopts = '--enable-cxx'
+
+# copy libgmp.so* to <installdir>/lib to make sure that it is picked up by tests
+# when EasyBuild is configured with --rpath, and clean up afterwards (let 'make install' do its job)
+pretestopts = "mkdir -p %%(installdir)s/lib && cp -a .libs/libgmp.%s* %%(installdir)s/lib && " % SHLIB_EXT
+testopts = " && rm -r %(installdir)s/lib"
+
+runtest = 'check'
+
+sanity_check_paths = {
+    'files': ['lib/lib%s.%s' % (l, e) for l in ['gmp', 'gmpxx'] for e in [SHLIB_EXT, 'a']] +
+             ['include/gmp.h', 'include/gmpxx.h'],
+    'dirs': ['share'],
+}
+
+moduleclass = 'math'

easybuild/easyconfigs/m/MPFR/MPFR-4.2.1-GCCcore-13.3.0.eb

@@ -0,0 +1,39 @@
+easyblock = 'ConfigureMake'
+
+name = 'MPFR'
+version = '4.2.1'
+
+homepage = 'https://www.mpfr.org'
+
+description = """
+ The MPFR library is a C library for multiple-precision floating-point
+ computations with correct rounding.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+
+source_urls = ['https://www.mpfr.org/mpfr-%(version)s/']
+sources = [SOURCELOWER_TAR_BZ2]
+checksums = ['b9df93635b20e4089c29623b19420c4ac848a1b29df1cfd59f26cab0d2666aa0']
+
+builddependencies = [
+    ('binutils', '2.42'),
+]
+
+dependencies = [
+    ('GMP', '6.3.0'),
+]
+
+runtest = 'check'
+
+# copy libmpfr.so* to <installdir>/lib to make sure that it  is picked up by tests
+# when EasyBuild is configured with --rpath, and clean up afterwards (let 'make install' do its job)
+pretestopts = "mkdir -p %%(installdir)s/lib && cp -a src/.libs/libmpfr.%s* %%(installdir)s/lib && " % SHLIB_EXT
+testopts = " && rm -r %(installdir)s/lib"
+
+sanity_check_paths = {
+    'files': ['lib/libmpfr.%s' % SHLIB_EXT, 'include/mpfr.h'],
+    'dirs': [],
+}
+
+moduleclass = 'math'

easybuild/easyconfigs/p/PCRE2/PCRE2-10.43-GCCcore-13.3.0.eb

@@ -0,0 +1,28 @@
+easyblock = 'ConfigureMake'
+
+name = 'PCRE2'
+version = '10.43'
+
+homepage = 'https://www.pcre.org/'
+description = """
+ The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax
+ and semantics as Perl 5.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/PCRE2Project/%(namelower)s/releases/download/%(namelower)s-%(version)s']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['889d16be5abb8d05400b33c25e151638b8d4bac0e2d9c76e9d6923118ae8a34e']
+
+builddependencies = [('binutils', '2.42')]
+
+configopts = "--enable-shared --enable-jit --enable-pcre2-16 --enable-unicode"
+
+sanity_check_paths = {
+    'files': ["bin/pcre2-config", "bin/pcre2grep", "bin/pcre2test", "lib/libpcre2-8.a", "lib/libpcre2-16.a"],
+    'dirs': [],
+}
+
+moduleclass = 'devel'

easybuild/easyconfigs/s/SWIG/SWIG-4.2.1-GCCcore-13.3.0.eb

@@ -0,0 +1,27 @@
+name = 'SWIG'
+version = '4.2.1'
+
+homepage = 'http://www.swig.org/'
+description = """SWIG is a software development tool that connects programs written in C and C++ with
+ a variety of high-level programming languages."""
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = [SOURCEFORGE_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['fa045354e2d048b2cddc69579e4256245d4676894858fcf0bab2290ecf59b7d8']
+
+builddependencies = [
+    ('binutils', '2.42'),
+    ('Bison', '3.8.2'),
+]
+
+dependencies = [
+    ('zlib', '1.3.1'),
+    ('PCRE2', '10.43'),
+]
+
+configopts = '--without-alllang --with-boost=no'
+
+moduleclass = 'devel'