{tools}[GCC/11.2.0] GCAM v5.4 #15398

sassy-crick · 2022-04-29T23:27:40Z

(created using eb --new-pr)

requires:

…ng and thus patching fails

boegelbot · 2022-05-03T13:53:19Z

@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/2264067213
Output from first failing test suite run:

ERROR: test_conflicts (test.easyconfigs.easyconfigs.EasyConfigTest)
Check whether any conflicts occur in software dependency graphs.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 325, in test_conflicts
    self.assertFalse(check_conflicts(self.ordered_specs, modules_tool(), check_inter_ec_conflicts=False),
  File "test/easyconfigs/easyconfigs.py", line 277, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 215, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: GCAM-model-interfaces/5.1-GCC-11.2.0 (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_graph (test.easyconfigs.easyconfigs.EasyConfigTest)
Unit test that builds a full dependency graph.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 312, in test_dep_graph
    dep_graph(fn, self.ordered_specs)
  File "test/easyconfigs/easyconfigs.py", line 277, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 215, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: GCAM-model-interfaces/5.1-GCC-11.2.0 (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 800, in test_dep_versions_per_toolchain_generation
    for ec in self.ordered_specs:
  File "test/easyconfigs/easyconfigs.py", line 277, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 215, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: GCAM-model-interfaces/5.1-GCC-11.2.0 (no easyconfig file or existing module found)'

----------------------------------------------------------------------
Ran 14628 tests in 692.178s

FAILED (errors=3)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice you me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

…h patching

sassy-crick · 2022-05-04T10:53:09Z

I have pushed the Java version to the latest, 17. I still got an EC for Java version 11, which seems to be used more frequently for GCC-11.20 it seems.
For compilation: see also Issue 15424

boegelbot · 2022-05-04T11:53:24Z

@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/2269245512
Output from first failing test suite run:

ERROR: test_dep_graph (test.easyconfigs.easyconfigs.EasyConfigTest)
Unit test that builds a full dependency graph.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 312, in test_dep_graph
    dep_graph(fn, self.ordered_specs)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/framework/easyconfig/tools.py", line 215, in dep_graph
    dgr.add_edge((spec['module'], dep))
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/pygraph/classes/digraph.py", line 169, in add_edge
    raise AdditionError("Edge (%s, %s) already in digraph" % (u, v))
AdditionError: Edge (GCAM/5.4-GCC-11.2.0-Java-17, Java/17) already in digraph

----------------------------------------------------------------------
Ran 14638 tests in 551.293s

FAILED (errors=1)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice you me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

sassy-crick · 2023-10-23T20:42:16Z

@boegelbot please test @ generoso

boegelbot · 2023-10-23T20:45:04Z

@sassy-crick: Request for testing this PR well received on login1

PR test command 'EB_PR=15398 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_15398 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 12036

Test results coming soon (I hope)...

- notification for comment with ID 1775987779 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-10-23T20:47:59Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 2 (2 easyconfigs in total)
cns2 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/25f1b4019d5851a9e0e747073ab68bd5 for a full test report.

sassy-crick · 2023-10-23T21:35:38Z

The problem is the apparently missing jni_md.h header, see here for a discussion about that. How shall we fix that?

github-actions · 2024-12-20T15:59:28Z

Updated software `GCAM-5.4-GCC-11.2.0-Java-11.eb`

Diff against GCAM-5.4-GCC-11.2.0-Java-17.eb

easybuild/easyconfigs/g/GCAM/GCAM-5.4-GCC-11.2.0-Java-17.eb

diff --git a/easybuild/easyconfigs/g/GCAM/GCAM-5.4-GCC-11.2.0-Java-17.eb b/easybuild/easyconfigs/g/GCAM/GCAM-5.4-GCC-11.2.0-Java-11.eb
index 7f2fb3a86f..2039675e82 100644
--- a/easybuild/easyconfigs/g/GCAM/GCAM-5.4-GCC-11.2.0-Java-17.eb
+++ b/easybuild/easyconfigs/g/GCAM/GCAM-5.4-GCC-11.2.0-Java-11.eb
@@ -76,7 +76,7 @@ dependencies = [
     ('imkl', '2021.4.0', '', SYSTEM),
     ('hector', '2.5.0'),
     ('tbb', '2021.4.0'),
-    ('Java', '17', '', SYSTEM),
+    ('Java', '11', '', SYSTEM),
     ('Xerces-C++', '3.2.3'),
 ]

Updated software `GCAM-5.4-GCC-11.2.0-Java-17.eb`

Diff against GCAM-5.4-GCC-11.2.0-Java-11.eb

easybuild/easyconfigs/g/GCAM/GCAM-5.4-GCC-11.2.0-Java-11.eb

diff --git a/easybuild/easyconfigs/g/GCAM/GCAM-5.4-GCC-11.2.0-Java-11.eb b/easybuild/easyconfigs/g/GCAM/GCAM-5.4-GCC-11.2.0-Java-17.eb
index 2039675e82..7f2fb3a86f 100644
--- a/easybuild/easyconfigs/g/GCAM/GCAM-5.4-GCC-11.2.0-Java-11.eb
+++ b/easybuild/easyconfigs/g/GCAM/GCAM-5.4-GCC-11.2.0-Java-17.eb
@@ -76,7 +76,7 @@ dependencies = [
     ('imkl', '2021.4.0', '', SYSTEM),
     ('hector', '2.5.0'),
     ('tbb', '2021.4.0'),
-    ('Java', '11', '', SYSTEM),
+    ('Java', '17', '', SYSTEM),
     ('Xerces-C++', '3.2.3'),
 ]

sassy added 2 commits April 30, 2022 00:27

adding easyconfigs: GCAM-5.4-GCC-11.2.0.eb

c92cea9

patchfile added

ff7346f

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sassy-crick mentioned this pull request May 3, 2022

{tools}[GCCcore/11.2.0] GCAM-model-interfaces v5.1 #15396

Closed

Tried to use bundle but changing into start-dir happens before patchi…

ee9dbed

…ng and thus patching fails

sassy added 2 commits May 3, 2022 15:16

Changed way how jar-files are installed, fixed the previous issue wit…

edc4d55

…h patching

Updated to Java-17, using version-suffix as well

43bde58

sassy added 3 commits August 3, 2022 17:47

duplicated Java entry removed

9e53aa8

True replaced with SYSTEM

214df0c

Surplus JAVA removed

7523bb5

JAVA include/linux dir added, see easybuilders#15424

6d0eb67

github-actions bot added the update label Dec 20, 2024

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{tools}[GCC/11.2.0] GCAM v5.4 #15398

{tools}[GCC/11.2.0] GCAM v5.4 #15398

sassy-crick commented Apr 29, 2022 •

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github-actions bot commented Dec 20, 2024

{tools}[GCC/11.2.0] GCAM v5.4 #15398

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{tools}[GCC/11.2.0] GCAM v5.4 #15398

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sassy-crick commented Apr 29, 2022 • edited Loading

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github-actions bot commented Dec 20, 2024

Updated software GCAM-5.4-GCC-11.2.0-Java-11.eb

Updated software GCAM-5.4-GCC-11.2.0-Java-17.eb

sassy-crick commented Apr 29, 2022 •

edited

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Updated software `GCAM-5.4-GCC-11.2.0-Java-11.eb`

Updated software `GCAM-5.4-GCC-11.2.0-Java-17.eb`