{bio}[foss/2021b] Compass v2024.04, anndata v0.9.2, python-libsbml v5.20.2 #20500

pavelToman · 2024-05-09T13:02:20Z

(created using eb --new-pr)

…-2021b.eb, python-libsbml-5.20.2-foss-2021b.eb

pavelToman · 2024-05-09T13:04:19Z

@boegelbot please test @ generoso

boegelbot · 2024-05-09T13:05:08Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=20500 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20500 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13434

Test results coming soon (I hope)...

- notification for comment with ID 2102621248 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-05-09T13:28:01Z

Test report by @boegelbot
FAILED
Build succeeded for 2 out of 4 (3 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/f1ae64ca2173474f53b050addb3f4fbc for a full test report.

pavelToman · 2024-05-13T08:05:21Z

@boegelbot please test @ generoso

boegelbot · 2024-05-13T08:05:38Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=20500 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20500 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13449

Test results coming soon (I hope)...

- notification for comment with ID 2106910386 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-05-13T08:28:11Z

Test report by @boegelbot
FAILED
Build succeeded for 2 out of 4 (3 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/25387e045e532f72b10b2595fdf4c978 for a full test report.

pavelToman · 2024-05-17T09:20:57Z

@boegelbot please test @ generoso

boegelbot · 2024-05-17T09:21:12Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=20500 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20500 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13483

Test results coming soon (I hope)...

- notification for comment with ID 2117116632 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-05-17T09:44:07Z

Test report by @boegelbot
FAILED
Build succeeded for 2 out of 4 (3 easyconfigs in total)
cns3 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/0a6a3a55db571f588aa6995ea655ecbe for a full test report.

pavelToman · 2024-06-06T10:29:59Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-06-06T10:40:08Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20500 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20500 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4300

Test results coming soon (I hope)...

- notification for comment with ID 2151942204 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-06-06T12:23:59Z

Test report by @boegelbot
FAILED
Build succeeded for 5 out of 7 (3 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/8e8bdddfcb090f4bb447210bf21f1122 for a full test report.

boegel · 2024-06-07T14:41:31Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-06-07T14:50:08Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20500 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20500 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4319

Test results coming soon (I hope)...

- notification for comment with ID 2154988679 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-06-07T15:11:44Z

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (3 easyconfigs in total)
jsczen3c2.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/68cef2ce328ae0d84fc0f4b69f7b79df for a full test report.

boegel · 2024-06-07T15:51:23Z

@boegelbot please test @ generoso

boegelbot · 2024-06-07T15:55:09Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=20500 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20500 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13672

Test results coming soon (I hope)...

- notification for comment with ID 2155106548 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-06-07T16:23:53Z

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (3 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/a3221aec8177e76a80c071ff90a04b53 for a full test report.

boegel · 2024-06-07T18:46:46Z

Test report by @boegel
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
node3120.skitty.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/boegel/113bb09114779f4a1a9e3c93eaa0a44d for a full test report.

boegel · 2024-06-07T21:06:58Z

Test report by @boegel
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
node3117.skitty.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/boegel/53e2c5755dbef8eca4cbc20d04d965e3 for a full test report.

boegel

lgtm

boegel · 2024-06-08T07:04:27Z

Going in, thanks @pavelToman!

pavelToman added 2 commits May 9, 2024 15:02

adding easyconfigs: Compass-2024.04-foss-2021b.eb, anndata-0.9.2-foss…

d3d3e57

…-2021b.eb, python-libsbml-5.20.2-foss-2021b.eb

delete unused extensions

966bcea

pavelToman mentioned this pull request May 9, 2024

Compass vscentrum/vsc-software-stack#305

Closed

2 tasks

update sklearn version

375842e

fix preinstallopts in Compass easyconfig

1c460e0

boegel added new update labels Jun 7, 2024

boegel added this to the release after 4.9.1 milestone Jun 7, 2024

boegel approved these changes Jun 8, 2024

View reviewed changes

boegel merged commit d37a9f1 into easybuilders:develop Jun 8, 2024
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{bio}[foss/2021b] Compass v2024.04, anndata v0.9.2, python-libsbml v5.20.2 #20500

{bio}[foss/2021b] Compass v2024.04, anndata v0.9.2, python-libsbml v5.20.2 #20500

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boegel commented Jun 8, 2024

{bio}[foss/2021b] Compass v2024.04, anndata v0.9.2, python-libsbml v5.20.2 #20500

{bio}[foss/2021b] Compass v2024.04, anndata v0.9.2, python-libsbml v5.20.2 #20500

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