{bio}[gompi/2023a] IQ-TREE v2.3.6

[pavelToman]

(created using eb --new-pr)

[github-actions]

Updated software IQ-TREE-2.3.6-gompi-2023a.eb

Diff against IQ-TREE-2.3.5-gompi-2023a.eb

easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.3.5-gompi-2023a.eb

diff --git a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.3.5-gompi-2023a.eb b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.3.6-gompi-2023a.eb
index ca4c707da6..a79ff265b7 100644
--- a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.3.5-gompi-2023a.eb
+++ b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.3.6-gompi-2023a.eb
@@ -1,11 +1,7 @@
-# Updated to v2.1.3 by
-# R.QIAO <[email protected]>
-# DeepThought, Flinders University
-
 easyblock = 'CMakeMake'
 
 name = 'IQ-TREE'
-version = '2.3.5'
+version = '2.3.6'
 
 # HTTPS is not working
 homepage = 'http://www.iqtree.org/'
@@ -14,13 +10,13 @@ description = """Efficient phylogenomic software by maximum likelihood"""
 toolchain = {'name': 'gompi', 'version': '2023a'}
 # Including 'usempi' will take precedence and override IQTREE_FLAGS and produces only 'iqtree-mpi' binary
 
-source_urls = ['https://github.com/iqtree/iqtree2/archive/refs/tags/']
-sources = ['v%(version)s.tar.gz']
+source_urls = ['https://github.com/iqtree/iqtree2/archive/']
+sources = [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}]
 patches = [
     'IQ-TREE-2.3.5_use_EB_LSD2.patch',
 ]
 checksums = [
-    {'v2.3.5.tar.gz': '8e323e0b7c46e97901d3500f11e810703e0e5d25848188047eca9602d03fa6b1'},
+    {'IQ-TREE-2.3.6.tar.gz': '2d389ea74e19773496363cd68270b341ac7cc47c60e7f32859682403b34744cf'},
     {'IQ-TREE-2.3.5_use_EB_LSD2.patch': 'b4578b01f06ae52b94b332622c0f6630497cd29cb61010f58f7c5018c2c32a5f'},
 ]
 

Diff against IQ-TREE-2.2.2.7-gompi-2023a.eb

easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.2.2.7-gompi-2023a.eb

diff --git a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.2.2.7-gompi-2023a.eb b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.3.6-gompi-2023a.eb
index eeb8368751..a79ff265b7 100644
--- a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.2.2.7-gompi-2023a.eb
+++ b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.3.6-gompi-2023a.eb
@@ -1,11 +1,7 @@
-# Updated to v2.1.3 by
-# R.QIAO <[email protected]>
-# DeepThought, Flinders University
-
 easyblock = 'CMakeMake'
 
 name = 'IQ-TREE'
-version = '2.2.2.7'
+version = '2.3.6'
 
 # HTTPS is not working
 homepage = 'http://www.iqtree.org/'
@@ -15,15 +11,13 @@ toolchain = {'name': 'gompi', 'version': '2023a'}
 # Including 'usempi' will take precedence and override IQTREE_FLAGS and produces only 'iqtree-mpi' binary
 
 source_urls = ['https://github.com/iqtree/iqtree2/archive/']
-sources = ['v%(version)s.tar.gz']
+sources = [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}]
 patches = [
-    'IQ-TREE-2.1.2_use_EB_LSD2.patch',
-    'IQ-TREE-2.2.1_fix-mpi.patch',
+    'IQ-TREE-2.3.5_use_EB_LSD2.patch',
 ]
 checksums = [
-    {'v2.2.2.7.tar.gz': '407a1a56d352ba9c2152a1d708cd29db872a41c252fbdc7acd8e0de0da8af008'},
-    {'IQ-TREE-2.1.2_use_EB_LSD2.patch': 'daa2ab12d44e26eb5607c4ed6acb9d970e230a83dabcf21461f37bc48263b816'},
-    {'IQ-TREE-2.2.1_fix-mpi.patch': '9ead6808efd11d4c01dd265cca6094cffd6377746d3b2fc84b43d2faeee0777c'},
+    {'IQ-TREE-2.3.6.tar.gz': '2d389ea74e19773496363cd68270b341ac7cc47c60e7f32859682403b34744cf'},
+    {'IQ-TREE-2.3.5_use_EB_LSD2.patch': 'b4578b01f06ae52b94b332622c0f6630497cd29cb61010f58f7c5018c2c32a5f'},
 ]
 
 builddependencies = [

Diff against IQ-TREE-2.2.2.6-gompi-2022b.eb

easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.2.2.6-gompi-2022b.eb

diff --git a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.2.2.6-gompi-2022b.eb b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.3.6-gompi-2023a.eb
index bc6834e8e8..a79ff265b7 100644
--- a/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.2.2.6-gompi-2022b.eb
+++ b/easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.3.6-gompi-2023a.eb
@@ -1,38 +1,32 @@
-# Updated to v2.1.3 by
-# R.QIAO <[email protected]>
-# DeepThought, Flinders University
-
 easyblock = 'CMakeMake'
 
 name = 'IQ-TREE'
-version = '2.2.2.6'
+version = '2.3.6'
 
 # HTTPS is not working
 homepage = 'http://www.iqtree.org/'
 description = """Efficient phylogenomic software by maximum likelihood"""
 
-toolchain = {'name': 'gompi', 'version': '2022b'}
+toolchain = {'name': 'gompi', 'version': '2023a'}
 # Including 'usempi' will take precedence and override IQTREE_FLAGS and produces only 'iqtree-mpi' binary
 
 source_urls = ['https://github.com/iqtree/iqtree2/archive/']
-sources = ['v%(version)s.tar.gz']
+sources = [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}]
 patches = [
-    'IQ-TREE-2.1.2_use_EB_LSD2.patch',
-    'IQ-TREE-2.2.1_fix-mpi.patch',
+    'IQ-TREE-2.3.5_use_EB_LSD2.patch',
 ]
 checksums = [
-    {'v2.2.2.6.tar.gz': 'f5d10c033f2ed1c81bb473f572c7a9fe72a275a48e2e93ad74e5f1c3d32fa8b9'},
-    {'IQ-TREE-2.1.2_use_EB_LSD2.patch': 'daa2ab12d44e26eb5607c4ed6acb9d970e230a83dabcf21461f37bc48263b816'},
-    {'IQ-TREE-2.2.1_fix-mpi.patch': '9ead6808efd11d4c01dd265cca6094cffd6377746d3b2fc84b43d2faeee0777c'},
+    {'IQ-TREE-2.3.6.tar.gz': '2d389ea74e19773496363cd68270b341ac7cc47c60e7f32859682403b34744cf'},
+    {'IQ-TREE-2.3.5_use_EB_LSD2.patch': 'b4578b01f06ae52b94b332622c0f6630497cd29cb61010f58f7c5018c2c32a5f'},
 ]
 
 builddependencies = [
-    ('CMake', '3.24.3'),
+    ('CMake', '3.26.3'),
     ('Eigen', '3.4.0'),
 ]
 dependencies = [
-    ('zlib', '1.2.12'),
-    ('Boost', '1.81.0'),
+    ('zlib', '1.2.13'),
+    ('Boost', '1.82.0'),
     ('LSD2', '2.4.1'),
 ]
 

[pavelToman]

• {bio}[gompi/2023a] IQ-TREE v2.3.6 #21883