Add easyconfig GenomeTools-1.6.2-GCC-13.2.0.eb

[julianmorillo]

No description provided.

[github-actions]

Updated software GenomeTools-1.6.2-GCC-13.2.0.eb

Diff against GenomeTools-1.6.2-GCC-12.2.0.eb

easybuild/easyconfigs/g/GenomeTools/GenomeTools-1.6.2-GCC-12.2.0.eb

diff --git a/easybuild/easyconfigs/g/GenomeTools/GenomeTools-1.6.2-GCC-12.2.0.eb b/easybuild/easyconfigs/g/GenomeTools/GenomeTools-1.6.2-GCC-13.2.0.eb
index cf8fe304a7..cd055e2e99 100644
--- a/easybuild/easyconfigs/g/GenomeTools/GenomeTools-1.6.2-GCC-12.2.0.eb
+++ b/easybuild/easyconfigs/g/GenomeTools/GenomeTools-1.6.2-GCC-13.2.0.eb
@@ -6,12 +6,16 @@ version = '1.6.2'
 homepage = 'http://genometools.org'
 description = "A comprehensive software library for efficient processing of structured genome annotations."
 
-toolchain = {'name': 'GCC', 'version': '12.2.0'}
+toolchain = {'name': 'GCC', 'version': '13.2.0'}
 
 github_account = 'genometools'
 source_urls = [GITHUB_LOWER_SOURCE]
 sources = ['v%(version)s.tar.gz']
-checksums = ['974825ddc42602bdce3d5fbe2b6e2726e7a35e81b532a0dc236f6e375d18adac']
+patches = ['%(name)s-%(version)s-riscv.patch']
+checksums = [
+    '974825ddc42602bdce3d5fbe2b6e2726e7a35e81b532a0dc236f6e375d18adac', # v%(version)s.tar.gz
+    '29d242d3f758b0a559ab12d12464d6bd21932e829f22097ee7e7b60a41c50fd4', # %(name)s-%(version)s-riscv.patch
+]
 
 # GenomeTools-1.6.2 has the following libraries bundled with it:
 # bzip2-1.0.6, cgilua-5.1.3, expat-2.0.1, lpeg-0.10.2, lua-5.1.5, luafilesystem-1.5.0, md5-1.2,
@@ -20,8 +24,8 @@ checksums = ['974825ddc42602bdce3d5fbe2b6e2726e7a35e81b532a0dc236f6e375d18adac']
 # Bundled libraries can be globally disabled with the option useshared=yes
 # However, it is preferable to use the bundled libraries due to the very old versions of some of them
 
-builddependencies = [('pkgconf', '1.9.3')]
-dependencies = [('Pango', '1.50.12')]
+builddependencies = [('pkgconf', '2.0.3')]
+dependencies = [('Pango', '1.51.0')]
 
 skipsteps = ['configure']
 

Diff against GenomeTools-1.6.2-GCC-11.3.0.eb

easybuild/easyconfigs/g/GenomeTools/GenomeTools-1.6.2-GCC-11.3.0.eb

diff --git a/easybuild/easyconfigs/g/GenomeTools/GenomeTools-1.6.2-GCC-11.3.0.eb b/easybuild/easyconfigs/g/GenomeTools/GenomeTools-1.6.2-GCC-13.2.0.eb
index f0ed002a62..cd055e2e99 100644
--- a/easybuild/easyconfigs/g/GenomeTools/GenomeTools-1.6.2-GCC-11.3.0.eb
+++ b/easybuild/easyconfigs/g/GenomeTools/GenomeTools-1.6.2-GCC-13.2.0.eb
@@ -6,12 +6,16 @@ version = '1.6.2'
 homepage = 'http://genometools.org'
 description = "A comprehensive software library for efficient processing of structured genome annotations."
 
-toolchain = {'name': 'GCC', 'version': '11.3.0'}
+toolchain = {'name': 'GCC', 'version': '13.2.0'}
 
 github_account = 'genometools'
 source_urls = [GITHUB_LOWER_SOURCE]
 sources = ['v%(version)s.tar.gz']
-checksums = ['974825ddc42602bdce3d5fbe2b6e2726e7a35e81b532a0dc236f6e375d18adac']
+patches = ['%(name)s-%(version)s-riscv.patch']
+checksums = [
+    '974825ddc42602bdce3d5fbe2b6e2726e7a35e81b532a0dc236f6e375d18adac', # v%(version)s.tar.gz
+    '29d242d3f758b0a559ab12d12464d6bd21932e829f22097ee7e7b60a41c50fd4', # %(name)s-%(version)s-riscv.patch
+]
 
 # GenomeTools-1.6.2 has the following libraries bundled with it:
 # bzip2-1.0.6, cgilua-5.1.3, expat-2.0.1, lpeg-0.10.2, lua-5.1.5, luafilesystem-1.5.0, md5-1.2,
@@ -20,8 +24,8 @@ checksums = ['974825ddc42602bdce3d5fbe2b6e2726e7a35e81b532a0dc236f6e375d18adac']
 # Bundled libraries can be globally disabled with the option useshared=yes
 # However, it is preferable to use the bundled libraries due to the very old versions of some of them
 
-builddependencies = [('pkgconf', '1.8.0')]
-dependencies = [('Pango', '1.50.7')]
+builddependencies = [('pkgconf', '2.0.3')]
+dependencies = [('Pango', '1.51.0')]
 
 skipsteps = ['configure']
 

Diff against GenomeTools-1.6.2-GCC-10.3.0.eb

easybuild/easyconfigs/g/GenomeTools/GenomeTools-1.6.2-GCC-10.3.0.eb

diff --git a/easybuild/easyconfigs/g/GenomeTools/GenomeTools-1.6.2-GCC-10.3.0.eb b/easybuild/easyconfigs/g/GenomeTools/GenomeTools-1.6.2-GCC-13.2.0.eb
index 00b9948dcb..cd055e2e99 100644
--- a/easybuild/easyconfigs/g/GenomeTools/GenomeTools-1.6.2-GCC-10.3.0.eb
+++ b/easybuild/easyconfigs/g/GenomeTools/GenomeTools-1.6.2-GCC-13.2.0.eb
@@ -6,12 +6,16 @@ version = '1.6.2'
 homepage = 'http://genometools.org'
 description = "A comprehensive software library for efficient processing of structured genome annotations."
 
-toolchain = {'name': 'GCC', 'version': '10.3.0'}
+toolchain = {'name': 'GCC', 'version': '13.2.0'}
 
 github_account = 'genometools'
 source_urls = [GITHUB_LOWER_SOURCE]
 sources = ['v%(version)s.tar.gz']
-checksums = ['974825ddc42602bdce3d5fbe2b6e2726e7a35e81b532a0dc236f6e375d18adac']
+patches = ['%(name)s-%(version)s-riscv.patch']
+checksums = [
+    '974825ddc42602bdce3d5fbe2b6e2726e7a35e81b532a0dc236f6e375d18adac', # v%(version)s.tar.gz
+    '29d242d3f758b0a559ab12d12464d6bd21932e829f22097ee7e7b60a41c50fd4', # %(name)s-%(version)s-riscv.patch
+]
 
 # GenomeTools-1.6.2 has the following libraries bundled with it:
 # bzip2-1.0.6, cgilua-5.1.3, expat-2.0.1, lpeg-0.10.2, lua-5.1.5, luafilesystem-1.5.0, md5-1.2,
@@ -20,8 +24,8 @@ checksums = ['974825ddc42602bdce3d5fbe2b6e2726e7a35e81b532a0dc236f6e375d18adac']
 # Bundled libraries can be globally disabled with the option useshared=yes
 # However, it is preferable to use the bundled libraries due to the very old versions of some of them
 
-builddependencies = [('pkg-config', '0.29.2')]
-dependencies = [('Pango', '1.48.5')]
+builddependencies = [('pkgconf', '2.0.3')]
+dependencies = [('Pango', '1.51.0')]
 
 skipsteps = ['configure']
 
@@ -33,4 +37,6 @@ sanity_check_paths = {
     'dirs': ['include', 'share'],
 }
 
+sanity_check_commands = ['gt -help']
+
 moduleclass = 'bio'

[verdurin]

Test report by @verdurin
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
easybuild-el8.cloud.in.bmrc.ox.ac.uk - Linux Rocky Linux 8.10, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/verdurin/0c05da1b4b96dd8b27f8e3c0c4b26902 for a full test report.

[verdurin]

@boegelbot please test @ generoso

[boegelbot]

@verdurin: Request for testing this PR well received on login1

PR test command 'EB_PR=22078 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_22078 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 14935

Test results coming soon (I hope)...

- notification for comment with ID 2574806349 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/88443fb78c41ba17be381bf8fa46ba38 for a full test report.

[verdurin]

@boegelbot please test @ jsc-zen3

[boegelbot]

@verdurin: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22078 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22078 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 5514

Test results coming soon (I hope)...

- notification for comment with ID 2574948549 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/50f5be8e38745ba476a83a438fe94a33 for a full test report.