update snapshots, document

easystats · Apr 1, 2024 · b17dbd8 · b17dbd8
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diff --git a/man/report.BFBayesFactor.Rd b/man/report.BFBayesFactor.Rd
diff --git a/tests/testthat/_snaps/windows/report.brmsfit.md b/tests/testthat/_snaps/windows/report.brmsfit.md
@@ -4,41 +4,6 @@
       report(model, verbose = FALSE)
     Message
       Start sampling
-      Chain 1 Informational Message: The current Metropolis proposal is about to be rejected because of the following issue:
-      Chain 1 Exception: normal_id_glm_lpdf: Scale vector is 0, but must be positive finite! (in 'C:/Users/DL/AppData/Local/Temp/RtmpERRA9z/model-12d437f47a61.stan', line 35, column 4 to column 62)
-      Chain 1 If this warning occurs sporadically, such as for highly constrained variable types like covariance matrices, then the sampler is fine,
-      Chain 1 but if this warning occurs often then your model may be either severely ill-conditioned or misspecified.
-      Chain 1 
-      Chain 2 Informational Message: The current Metropolis proposal is about to be rejected because of the following issue:
-      Chain 2 Exception: normal_id_glm_lpdf: Scale vector is inf, but must be positive finite! (in 'C:/Users/DL/AppData/Local/Temp/RtmpERRA9z/model-12d437f47a61.stan', line 35, column 4 to column 62)
-      Chain 2 If this warning occurs sporadically, such as for highly constrained variable types like covariance matrices, then the sampler is fine,
-      Chain 2 but if this warning occurs often then your model may be either severely ill-conditioned or misspecified.
-      Chain 2 
-      Chain 2 Informational Message: The current Metropolis proposal is about to be rejected because of the following issue:
-      Chain 2 Exception: normal_id_glm_lpdf: Scale vector is inf, but must be positive finite! (in 'C:/Users/DL/AppData/Local/Temp/RtmpERRA9z/model-12d437f47a61.stan', line 35, column 4 to column 62)
-      Chain 2 If this warning occurs sporadically, such as for highly constrained variable types like covariance matrices, then the sampler is fine,
-      Chain 2 but if this warning occurs often then your model may be either severely ill-conditioned or misspecified.
-      Chain 2 
-      Chain 3 Informational Message: The current Metropolis proposal is about to be rejected because of the following issue:
-      Chain 3 Exception: normal_id_glm_lpdf: Scale vector is inf, but must be positive finite! (in 'C:/Users/DL/AppData/Local/Temp/RtmpERRA9z/model-12d437f47a61.stan', line 35, column 4 to column 62)
-      Chain 3 If this warning occurs sporadically, such as for highly constrained variable types like covariance matrices, then the sampler is fine,
-      Chain 3 but if this warning occurs often then your model may be either severely ill-conditioned or misspecified.
-      Chain 3 
-      Chain 3 Informational Message: The current Metropolis proposal is about to be rejected because of the following issue:
-      Chain 3 Exception: normal_id_glm_lpdf: Scale vector is inf, but must be positive finite! (in 'C:/Users/DL/AppData/Local/Temp/RtmpERRA9z/model-12d437f47a61.stan', line 35, column 4 to column 62)
-      Chain 3 If this warning occurs sporadically, such as for highly constrained variable types like covariance matrices, then the sampler is fine,
-      Chain 3 but if this warning occurs often then your model may be either severely ill-conditioned or misspecified.
-      Chain 3 
-      Chain 3 Informational Message: The current Metropolis proposal is about to be rejected because of the following issue:
-      Chain 3 Exception: normal_id_glm_lpdf: Scale vector is inf, but must be positive finite! (in 'C:/Users/DL/AppData/Local/Temp/RtmpERRA9z/model-12d437f47a61.stan', line 35, column 4 to column 62)
-      Chain 3 If this warning occurs sporadically, such as for highly constrained variable types like covariance matrices, then the sampler is fine,
-      Chain 3 but if this warning occurs often then your model may be either severely ill-conditioned or misspecified.
-      Chain 3 
-      Chain 3 Informational Message: The current Metropolis proposal is about to be rejected because of the following issue:
-      Chain 3 Exception: normal_id_glm_lpdf: Scale vector is inf, but must be positive finite! (in 'C:/Users/DL/AppData/Local/Temp/RtmpERRA9z/model-12d437f47a61.stan', line 35, column 4 to column 62)
-      Chain 3 If this warning occurs sporadically, such as for highly constrained variable types like covariance matrices, then the sampler is fine,
-      Chain 3 but if this warning occurs often then your model may be either severely ill-conditioned or misspecified.
-      Chain 3 
     Output
       We fitted a Bayesian linear model (estimated using MCMC sampling with 4 chains
       of 300 iterations and a warmup of 150) to predict mpg with qsec and wt

diff --git a/tests/testthat/_snaps/windows/report_performance.md b/tests/testthat/_snaps/windows/report_performance.md
@@ -2,10 +2,6 @@
 
     Code
       report_performance(x5)
-    Message
-      VSCode WebView has restricted access to local file.
-      Opening in external browser...
-      Browsing file:///C:/Users/DL/AppData/Local/Temp/RtmpERRA9z/file12d47a7090f_StanProgress.html
     Output
       The model's explanatory power is substantial (R2 = 0.62, 95% CI [0.53, 0.69],
       adj. R2 = 0.61)
@@ -14,43 +10,27 @@
 
     Code
       summary(report_performance(x5))
-    Message
-      VSCode WebView has restricted access to local file.
-      Opening in external browser...
-      Browsing file:///C:/Users/DL/AppData/Local/Temp/RtmpERRA9z/file12d465985229_StanProgress.html
     Output
       [1] "The model's explanatory power is substantial (R2 = 0.62, adj. R2 = 0.61)"
 
 ---
 
     Code
       report_performance(x6)
-    Message
-      VSCode WebView has restricted access to local file.
-      Opening in external browser...
-      Browsing file:///C:/Users/DL/AppData/Local/Temp/RtmpERRA9z/file12d4560a39d2_StanProgress.html
     Output
       The model's explanatory power is substantial (R2 = 0.54, 95% CI [0.27, 0.77])
 
 ---
 
     Code
       summary(report_performance(x6))
-    Message
-      VSCode WebView has restricted access to local file.
-      Opening in external browser...
-      Browsing file:///C:/Users/DL/AppData/Local/Temp/RtmpERRA9z/file12d452f95d46_StanProgress.html
     Output
       [1] "The model's explanatory power is substantial (R2 = 0.54)"
 
 # report_performance Bayesian 2)
 
     Code
       report_performance(x7)
-    Message
-      VSCode WebView has restricted access to local file.
-      Opening in external browser...
-      Browsing file:///C:/Users/DL/AppData/Local/Temp/RtmpERRA9z/file12d412fbc1_StanProgress.html
     Output
       The model's explanatory power is substantial (R2 = 0.83, 95% CI [0.79, 0.86],
       adj. R2 = 0.83) and the part related to the fixed effects alone (marginal R2)
@@ -60,10 +40,6 @@
 
     Code
       summary(report_performance(x7))
-    Message
-      VSCode WebView has restricted access to local file.
-      Opening in external browser...
-      Browsing file:///C:/Users/DL/AppData/Local/Temp/RtmpERRA9z/file12d426713848_StanProgress.html
     Output
       [1] "The model's explanatory power is substantial (R2 = 0.83, adj. R2 = 0.83) and the part related to the fixed effects alone (marginal R2) is of 0.95"