snakemake pipeline for Hi-C post-processing

Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.

this repository accompanies the book "Grokking Deep Learning"

Lightweight converter between hic and cool contact matrices.

The tools for your .cool's

Genomic interval operations on Pandas DataFrames

Small library to sample & evolve Rouse conformations

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRNAseq data. However, existing techniques are based on Euclide…

Codes relevant for "Chromosome organization by one-sided and two-sided loop extrusion"

Super-project for modularized Boost

OpenMM is a toolkit for molecular simulation using high performance GPU code.

Chromosome polymer simulations and in silico capture experiments

Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer

ISP Data Pollution to Protect Private Browsing History with Obfuscation

A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.

A cool place to store your Hi-C