fix tests & Rdoc

eblondel · Dec 30, 2024 · 575d4bd · 575d4bd
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diff --git a/.gitignore b/.gitignore
@@ -1,6 +1,7 @@
 .Rproj.user
 .Rhistory
 .RData
+.REnviron
 =======
 # History files
 .Rhistory

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -2,7 +2,7 @@ Package: geometa
 Type: Package
 Title: Tools for Reading and Writing ISO/OGC Geographic Metadata
 Version: 0.9
-Date: 2024-12-12
+Date: 2024-12-30
 Authors@R: c(
   person("Emmanuel", "Blondel", role = c("aut", "cre"), email = "[email protected]", comment = c(ORCID = "0000-0002-5870-5762")),
   person("R Consortium", role = "fnd"))

diff --git a/R/GMLAbstractCRS.R b/R/GMLAbstractCRS.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML abstract CRS
-#' @return Object of \code{\link{R6Class}} for modelling an GMLAbstractCRS
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GMLAbstractCRS
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractCoordinateOperation.R b/R/GMLAbstractCoordinateOperation.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML abstract coordinate Operation
-#' @return Object of \code{\link{R6Class}} for modelling an GMLAbstractCoordinateOperation
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GMLAbstractCoordinateOperation
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractCoordinateSystem.R b/R/GMLAbstractCoordinateSystem.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML abstract coordinate system
-#' @return Object of \code{\link{R6Class}} for modelling an GMLAbstractCoordinateSystem
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GMLAbstractCoordinateSystem
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractCoverage.R b/R/GMLAbstractCoverage.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML abstract coverage
-#' @return Object of \code{\link{R6Class}} for modelling an GML abstract coverage
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML abstract coverage
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @note Internal binding used with OGC services
 #' 

diff --git a/R/GMLAbstractCurve.R b/R/GMLAbstractCurve.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML Curve
-#' @return Object of \code{\link{R6Class}} for modelling an GML abstract curve
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML abstract curve
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @note Experimental
 #' 

diff --git a/R/GMLAbstractDiscreteCoverage.R b/R/GMLAbstractDiscreteCoverage.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML abstract discrete coverage
-#' @return Object of \code{\link{R6Class}} for modelling an GML abstract discrete coverage
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML abstract discrete coverage
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractFeature.R b/R/GMLAbstractFeature.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML abstract feature
-#' @return Object of \code{\link{R6Class}} for modelling an GML abstract feature
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML abstract feature
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractGML.R b/R/GMLAbstractGML.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML
-#' @return Object of \code{\link{R6Class}} for modelling an GML abstract GML
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML abstract GML
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractGeneralConversion.R b/R/GMLAbstractGeneralConversion.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML abstract general conversion
-#' @return Object of \code{\link{R6Class}} for modelling an GMLAbstractGeneralConversion
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GMLAbstractGeneralConversion
+#' @format \code{\link[R6]{R6Class}} object.
 #'
 #' @note Experimental
 #' 

diff --git a/R/GMLAbstractGeneralDerivedCRS.R b/R/GMLAbstractGeneralDerivedCRS.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML abstract single crs
-#' @return Object of \code{\link{R6Class}} for modelling an GMLAbstractGeneralDerivedCRS
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GMLAbstractGeneralDerivedCRS
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractGeneralOperationParameter.R b/R/GMLAbstractGeneralOperationParameter.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML abstract general operation parameter
-#' @return Object of \code{\link{R6Class}} for modelling an GMLAbstractGeneralOperationParameter
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GMLAbstractGeneralOperationParameter
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractGeneralParameterValue.R b/R/GMLAbstractGeneralParameterValue.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML Abstract GeneralParameterValue
-#' @return Object of \code{\link{R6Class}} for modelling an GML abstract general ParameterValue
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML abstract general ParameterValue
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractGeometricAggregate.R b/R/GMLAbstractGeometricAggregate.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML Geometric Aggregate
-#' @return Object of \code{\link{R6Class}} for modelling an GML abstract Geometric Aggregate
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML abstract Geometric Aggregate
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractGeometricPrimitive.R b/R/GMLAbstractGeometricPrimitive.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML Geometric Primitive
-#' @return Object of \code{\link{R6Class}} for modelling an GML abstract Geometric Primitive
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML abstract Geometric Primitive
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractGeometry.R b/R/GMLAbstractGeometry.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML Geometry
-#' @return Object of \code{\link{R6Class}} for modelling an GML abstract Geometry
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML abstract Geometry
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractImplicitGeometry.R b/R/GMLAbstractImplicitGeometry.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML Implicit Geometry
-#' @return Object of \code{\link{R6Class}} for modelling an GML abstract implicit Geometry
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML abstract implicit Geometry
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractObject.R b/R/GMLAbstractObject.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML
-#' @return Object of \code{\link{R6Class}} for modelling an GML abstract object
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML abstract object
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractReferenceableGrid.R b/R/GMLAbstractReferenceableGrid.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML Grid
-#' @return Object of \code{\link{R6Class}} for modelling an GML grid
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML grid
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   OGC Geography Markup Language. http://www.opengeospatial.org/standards/gml

diff --git a/R/GMLAbstractRing.R b/R/GMLAbstractRing.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML Geometric ring
-#' @return Object of \code{\link{R6Class}} for modelling an GML abstract ring
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML abstract ring
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractSingleCRS.R b/R/GMLAbstractSingleCRS.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML abstract single crs
-#' @return Object of \code{\link{R6Class}} for modelling an GMLAbstractSingleCRS
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GMLAbstractSingleCRS
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractSingleOperation.R b/R/GMLAbstractSingleOperation.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML abstract single Operation
-#' @return Object of \code{\link{R6Class}} for modelling an GMLAbstractSingleOperation
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GMLAbstractSingleOperation
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAbstractSurface.R b/R/GMLAbstractSurface.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML Surface
-#' @return Object of \code{\link{R6Class}} for modelling an GML abstract surface
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML abstract surface
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @note Experimental
 #' 

diff --git a/R/GMLAbstractTimeGeometricPrimitive.R b/R/GMLAbstractTimeGeometricPrimitive.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO temporal primitive
-#' @return Object of \code{\link{R6Class}} for modelling an ISO GML abstract temporal primitive
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an ISO GML abstract temporal primitive
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19115:2003 - Geographic information -- Metadata

diff --git a/R/GMLAbstractTimeObject.R b/R/GMLAbstractTimeObject.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML time object abstract
-#' @return Object of \code{\link{R6Class}} for modelling an GML AbstractTimeObject
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML AbstractTimeObject
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @note Experimental
 #' 

diff --git a/R/GMLAbstractTimePrimitive.R b/R/GMLAbstractTimePrimitive.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML time primitive abstract
-#' @return Object of \code{\link{R6Class}} for modelling an GML AbstractTimePrimitive
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML AbstractTimePrimitive
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLAffineCS.R b/R/GMLAffineCS.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML affine coordinate system
-#' @return Object of \code{\link{R6Class}} for modelling an GMLAffineCS
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GMLAffineCS
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @note Experimental
 #' 

diff --git a/R/GMLBaseUnit.R b/R/GMLBaseUnit.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML base unit definition
-#' @return Object of \code{\link{R6Class}} for modelling an GML base unit
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML base unit
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @examples 
 #'   gml <- GMLBaseUnit$new()

diff --git a/R/GMLCOVAbstractCoverage.R b/R/GMLCOVAbstractCoverage.R
@@ -3,8 +3,8 @@
 #' @docType class
 #' @export
 #' @keywords GML GMLCOV Coverage
-#' @return Object of \code{\link{R6Class}} for modelling a GMLCOV Abstract Coverage
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling a GMLCOV Abstract Coverage
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   GML 3.2.1 Application Schema for Coverages http://www.opengis.net/gmlcov/1.0

diff --git a/R/GMLCOVExtension.R b/R/GMLCOVExtension.R
@@ -3,8 +3,8 @@
 #' @docType class
 #' @export
 #' @keywords GML GMLCOV Coverage
-#' @return Object of \code{\link{R6Class}} for modelling a GMLCOV Extension
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling a GMLCOV Extension
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @note Internal binding for OGC services
 #' @references 

diff --git a/R/GMLCartesianCS.R b/R/GMLCartesianCS.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML cartesian coordinate system
-#' @return Object of \code{\link{R6Class}} for modelling an GMLCartesianCS
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GMLCartesianCS
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @note Experimental
 #' 

diff --git a/R/GMLCodeType.R b/R/GMLCodeType.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords GML codetype
-#' @return Object of \code{\link{R6Class}} for modelling a GML code type
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling a GML code type
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLCompoundCRS.R b/R/GMLCompoundCRS.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML compound CRS
-#' @return Object of \code{\link{R6Class}} for modelling an GMLCompoundCRS
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link [R6]{R6Class}} for modelling an GMLCompoundCRS
+#' @format \code{\link [R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.

diff --git a/R/GMLConventionalUnit.R b/R/GMLConventionalUnit.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML conventional unit definition
-#' @return Object of \code{\link{R6Class}} for modelling an GML derived unit
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GML derived unit
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @examples
 #'    gml <- GMLConventionalUnit$new()

diff --git a/R/GMLConversion.R b/R/GMLConversion.R
@@ -4,8 +4,8 @@
 #' @importFrom R6 R6Class
 #' @export
 #' @keywords ISO GML conversion
-#' @return Object of \code{\link{R6Class}} for modelling an GMLConversion
-#' @format \code{\link{R6Class}} object.
+#' @return Object of \code{\link[R6]{R6Class}} for modelling an GMLConversion
+#' @format \code{\link[R6]{R6Class}} object.
 #' 
 #' @references 
 #'   ISO 19136:2007 Geographic Information -- Geographic Markup Language.