fix: use the right functions in utils

ebmdatalab · Sep 26, 2023 · 1411024 · 1411024
1 parent dd101df
commit 1411024
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/pubmed.py b/pubmed.py
@@ -10,7 +10,7 @@
 
 import pandas
 
-from setup import get_env_setting, setup_logger, setup_parser
+from setup import get_env_setting, get_full_parser, setup_logger
 from utils import (
     create_session,
     filter_unindexed,
@@ -167,7 +167,7 @@ def add_pubmed_metadata(args):
 
 
 if __name__ == "__main__":
-    parent = setup_parser()
+    parent = get_full_parser()
     pubmed_parser = argparse.ArgumentParser(parents=[parent])
     subparsers = pubmed_parser.add_subparsers()