Merge branch 'main' into eqctier3-74179ca0-6a1b-4e5d-a3c4-0f113978a2b3

ecmwf-projects · Oct 14, 2024 · 7dd1b1f · 7dd1b1f
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diff --git a/.github/ISSUE_TEMPLATE/notebook.yml b/.github/ISSUE_TEMPLATE/notebook.yml
@@ -9,13 +9,15 @@ body:
     description: Choose the data type.
     multiple: false
     options:
-    - Climate Projection
+    - Climate Projection - CMIP6
+    - Climate Projection - CORDEX
     - In Situ
     - Reanalyses
     - Satellite ECVs - Atmosphere Physics
     - Satellite ECVs - Atmospheric Composition
+    - Satellite ECVs - Cryosphere
     - Satellite ECVs - Land Biosphere
-    - Satellite ECVs - Land Hydrology & Cryosphere
+    - Satellite ECVs - Land Hydrology
     - Satellite ECVs - Ocean
     - Seasonal Forecasts
   validations:
@@ -28,18 +30,13 @@ body:
     description: Choose the CIM quality assessment category.
     multiple: false
     options:
-    - Climate And Weather Extremes
-    - Climate Impact Indicators
-    - Climate Monitoring
-    - Consistency Assessment
-    - Data Completeness
-    - Forecast Skill
-    - Intercomparison
-    - Mean
-    - Model Performance
-    - Trend Assessment
-    - Uncertainty
-    - Variability
+    - completeness
+    - consistency
+    - extremes-detection
+    - resolution
+    - timeliness
+    - uncertainty-quality-flags
+    - validation
   validations:
     required: true
 
@@ -103,4 +100,4 @@ body:
     label: Anything else we need to know?
     description: Describe any other information you want to share.
   validations:
-    required: true
+    required: false
diff --git a/.github/workflows/deploy-book.yml b/.github/workflows/deploy-book.yml
@@ -4,6 +4,7 @@ on:
   push:
     branches:
     - main
+  workflow_dispatch:
 
 env:
   PRE_BUILD_DIR: "_pre_build"

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -1,25 +1,27 @@
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v4.6.0
+  rev: v5.0.0
   hooks:
   - id: check-yaml
   - id: check-toml
   - id: check-merge-conflict
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: v0.5.1
+  rev: v0.6.9
   hooks:
   - id: ruff
     args: [--fix, --show-fixes]
+    types_or: [python, pyi]
   - id: ruff-format
+    types_or: [python, pyi]
 - repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
-  rev: v2.13.0
+  rev: v2.14.0
   hooks:
   - id: pretty-format-yaml
     args: [--autofix, --preserve-quotes]
   - id: pretty-format-toml
     args: [--autofix]
 - repo: https://github.com/pre-commit/mirrors-mypy
-  rev: v1.10.1
+  rev: v1.11.2
   hooks:
   - id: mypy
     args: [--strict, --ignore-missing-imports]
@@ -31,6 +33,22 @@ repos:
     language: python
     types: [jupyter]
     exclude: ^templates/
+- repo: local
+  hooks:
+  - id: fix-markdown-strings
+    name: fix-markdown-strings
+    entry: python scripts/fix-markdown-strings.py
+    language: python
+    types: [jupyter]
+    additional_dependencies: [nbformat]
+- repo: local
+  hooks:
+  - id: validate-headings
+    name: validate-headings
+    entry: python scripts/validate-headings.py
+    language: python
+    types: [jupyter]
+    additional_dependencies: [nbformat]
 - repo: https://github.com/executablebooks/mdformat
   rev: 0.7.17
   hooks:

diff --git a/Climate_Projections/CMIP6/CMIP6.md b/Climate_Projections/CMIP6/CMIP6.md
@@ -0,0 +1,10 @@
+![logo](../../LogoLine_horizon_C3S.png)
+
+# CMIP6
+
+The individual quality assessments produced by the EQC evaluators are listed and linked below.
+
+**Available assessments**
+
+```{tableofcontents}
+```
diff --git a/Climate_Projections/CMIP6/climate_projections-cmip6_climate-and-weather-extremes_q01.ipynb b/Climate_Projections/CMIP6/climate_projections-cmip6_climate-and-weather-extremes_q01.ipynb
diff --git a/Climate_Projections/CMIP6/climate_projections-cmip6_climate-and-weather-extremes_q02.ipynb b/Climate_Projections/CMIP6/climate_projections-cmip6_climate-and-weather-extremes_q02.ipynb
diff --git a/Climate_Projections/CMIP6/climate_projections-cmip6_climate-and-weather-extremes_q03.ipynb b/Climate_Projections/CMIP6/climate_projections-cmip6_climate-and-weather-extremes_q03.ipynb
diff --git a/Climate_Projections/CMIP6/climate_projections-cmip6_climate-impact-indicators_q01.ipynb b/Climate_Projections/CMIP6/climate_projections-cmip6_climate-impact-indicators_q01.ipynb
diff --git a/Climate_Projections/CMIP6/climate_projections-cmip6_climate-impact-indicators_q02.ipynb b/Climate_Projections/CMIP6/climate_projections-cmip6_climate-impact-indicators_q02.ipynb
diff --git a/Climate_Projections/CMIP6/climate_projections-cmip6_climate-impact-indicators_q03.ipynb b/Climate_Projections/CMIP6/climate_projections-cmip6_climate-impact-indicators_q03.ipynb
diff --git a/Climate_Projections/CORDEX/CORDEX.md b/Climate_Projections/CORDEX/CORDEX.md
@@ -0,0 +1,10 @@
+![logo](../../LogoLine_horizon_C3S.png)
+
+# CORDEX
+
+The individual quality assessments produced by the EQC evaluators are listed and linked below.
+
+**Available assessments**
+
+```{tableofcontents}
+```
diff --git a/...X/climate_projections-cordex-domains-single-levels_climate-and-weather-extremes_q01.ipynb b/...X/climate_projections-cordex-domains-single-levels_climate-and-weather-extremes_q01.ipynb
diff --git a/...X/climate_projections-cordex-domains-single-levels_climate-and-weather-extremes_q02.ipynb b/...X/climate_projections-cordex-domains-single-levels_climate-and-weather-extremes_q02.ipynb
diff --git a/...X/climate_projections-cordex-domains-single-levels_climate-and-weather-extremes_q03.ipynb b/...X/climate_projections-cordex-domains-single-levels_climate-and-weather-extremes_q03.ipynb
diff --git a/...X/climate_projections-cordex-domains-single-levels_climate-and-weather-extremes_q04.ipynb b/...X/climate_projections-cordex-domains-single-levels_climate-and-weather-extremes_q04.ipynb
diff --git a/Climate_Projections/climate.md b/Climate_Projections/climate.md
@@ -4,7 +4,7 @@
 
 The individual quality assessments produced by the EQC evaluators are listed and linked below.
 
-## Available assessments
+**Available assessments**
 
 ```{tableofcontents}
 ```
diff --git a/In_Situ/insitu.md b/In_Situ/insitu.md
@@ -4,7 +4,7 @@
 
 The individual quality assessments produced by the EQC evaluators are listed and linked below.
 
-## Available assessments
+**Available assessments**
 
 ```{tableofcontents}
 ```
diff --git a/README.md b/README.md
@@ -3,6 +3,9 @@
 > \[!WARNING\]
 > Please note that this repository is used for development and review, so quality assessments should be considered work in progress until they are merged into the main branch
 
+> \[!NOTE\]\
+> If anything is unclear with the templates, or if you encounter any problems, please report them at [GH164](https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/issues/164).
+
 ## Quick start
 
 To install pre-commit:
@@ -33,18 +36,13 @@ Data types:
 
 Assessment categories:
 
-- climate-and-weather-extremes
-- climate-impact-indicators
-- climate-monitoring
-- consistency-assessment
-- data-completeness
-- forecast-skill
-- intercomparison
-- mean
-- model-performance
-- trend-assessment
-- uncertainty
-- variability
+- completeness
+- consistency
+- extremes-detection
+- resolution
+- timeliness
+- uncertainty-quality-flags
+- validation
 
 ## License
 

diff --git a/Reanalyses/reanalysis.md b/Reanalyses/reanalysis.md
@@ -4,7 +4,7 @@
 
 The individual quality assessments produced by the EQC evaluators are listed and linked below.
 
-## Available assessments
+**Available assessments**
 
 ```{tableofcontents}
 ```
diff --git a/Satellite_ECVs/Atmosphere_Physics/Atmosphere_Physics.md b/Satellite_ECVs/Atmosphere_Physics/Atmosphere_Physics.md
@@ -0,0 +1,10 @@
+![logo](../../LogoLine_horizon_C3S.png)
+
+# Atmosphere Physics
+
+The individual quality assessments produced by the EQC evaluators are listed and linked below.
+
+**Available assessments**
+
+```{tableofcontents}
+```
diff --git a/Satellite_ECVs/Atmosphere_Physics_ECVs/.gitkeep b/Satellite_ECVs/Atmosphere_Physics_ECVs/.gitkeep
diff --git a/Satellite_ECVs/Atmospheric_Composition/Atmospheric_Composition.md b/Satellite_ECVs/Atmospheric_Composition/Atmospheric_Composition.md
@@ -0,0 +1,10 @@
+![logo](../../LogoLine_horizon_C3S.png)
+
+# Atmospheric Composition
+
+The individual quality assessments produced by the EQC evaluators are listed and linked below.
+
+**Available assessments**
+
+```{tableofcontents}
+```