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Local Area graphs #30

Merged
merged 168 commits into from
Oct 3, 2024
Merged

Local Area graphs #30

merged 168 commits into from
Oct 3, 2024

Commits on Jun 24, 2024

  1. feat: Initial implementation of global graphs 

    Co-authored by: Mario Santa Cruz <[email protected]>
    @theissenhelen
    theissenhelen committed Jun 24, 2024
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Commits on Jun 25, 2024

  1. add dependencies

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    theissenhelen committed Jun 25, 2024
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  2. add cli command

    @JPXKQX
    JPXKQX committed Jun 25, 2024
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  3. Ignore .pt files

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    JPXKQX committed Jun 25, 2024
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  4. run pre-commit

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    JPXKQX committed Jun 25, 2024
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Commits on Jun 26, 2024

  1. docstring + log erros

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    JPXKQX committed Jun 26, 2024
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  2. initial tests

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    JPXKQX committed Jun 26, 2024
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  3. feat: initial version of AttributeBuilder

    @theissenhelen
    theissenhelen committed Jun 26, 2024
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  4. refactor: separate into node edge attribute builders

    @theissenhelen
    theissenhelen committed Jun 26, 2024
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Commits on Jun 27, 2024

  1. feat: edge_length moved to edges/attributes.py

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    JPXKQX committed Jun 27, 2024
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  2. remove __init__

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    JPXKQX committed Jun 27, 2024
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  3. feat: test edge builders

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    JPXKQX committed Jun 27, 2024
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  4. add blank lines

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    JPXKQX committed Jun 27, 2024
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  5. dep: hydra-core

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  6. bugfix (encoder edge lengths) + refector

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    JPXKQX committed Jun 27, 2024
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  7. deps: == to >=

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    JPXKQX committed Jun 27, 2024
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  8. rename node builder classes

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    JPXKQX committed Jun 27, 2024
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  9. fix: tests

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    JPXKQX committed Jun 27, 2024
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Commits on Jun 28, 2024

  1. feat: support path and dict for config argument

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  2. fix: error

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Commits on Jul 1, 2024

  1. refactor: naming

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  2. fix: pre-commit

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    theissenhelen committed Jul 1, 2024
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  3. feat: builders icosahedral

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  4. feat: Add icosahedral graph generation 

    Co-authored-by: Mario Santa Cruz <[email protected]>
    @theissenhelen @JPXKQX
    theissenhelen and JPXKQX committed Jul 1, 2024
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  5. refactor: remove create_shere

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    theissenhelen committed Jul 1, 2024
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  6. feat: Icosahedral edge builder

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  7. feat: hexagonal graph generation 

    Co-authored-by: Mario Santa Cruz <[email protected]>
    @theissenhelen @JPXKQX
    theissenhelen and JPXKQX committed Jul 1, 2024
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  8. feat: hexagonal builders

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  9. fix: AOI not implemented yet

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  10. fix: abstractmethod and renaming

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  11. chore: add dependencies

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    theissenhelen committed Jul 1, 2024
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  12. test: add tests for trimesh

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    theissenhelen committed Jul 1, 2024
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  13. test: add tests for hex (h3)

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  14. fix: imports

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  15. fix: output type

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    theissenhelen committed Jul 1, 2024
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  16. refactor: delete unused file

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    theissenhelen committed Jul 1, 2024
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  17. refactor: renaming and positioning

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    theissenhelen committed Jul 1, 2024
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  18. feat: ensure src and dst always the same

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  19. fix: imports

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  20. fix: edge_name not supported

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  21. test: add tests for TriIcosahedralEdges

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Commits on Jul 2, 2024

  1. fix: assert missing for Hexagonal edges

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  2. test: hexagonal edges

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  3. fix: avoid same name

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    theissenhelen committed Jul 2, 2024
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Commits on Jul 3, 2024

  1. feat: LimitedAreaZarrNodes

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    theissenhelen committed Jul 3, 2024
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  2. feat: add KNNMaskBuilder for use with LAM

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    theissenhelen committed Jul 3, 2024
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  3. feat: add KNNMaskBuilder to TriIcosahedral

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    theissenhelen committed Jul 3, 2024
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  4. feat: AreaNPZFileNodes

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    theissenhelen committed Jul 3, 2024
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  5. fix: KNNAreaMaskBuilder working with NPZ

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  6. fix: imports and naming

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Commits on Jul 5, 2024

  1. fix: TriIocsahedral working for area masks

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  2. feat: debugging purposes

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  3. refactor: rename tests

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  4. Global Encoder-Processor-Decoder graph (#9) 

    * feat: Initial implementation of global graphs

Co-authored by: Mario Santa Cruz <[email protected]>
Co-authored-by: Helen Theissen <[email protected]>
Co-authored-by: Sara Hahner <[email protected]>
Co-authored-by: Jesper Dramsch <[email protected]>
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    JPXKQX authored Jul 5, 2024
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Commits on Jul 6, 2024

  1. fix: attributes as torch.float32

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  2. new test: attributes must be float32

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    JPXKQX committed Jul 6, 2024
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  3. fix typo

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    JPXKQX committed Jul 6, 2024
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  4. Homogeneize base builders

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  5. improve test docstrings

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    JPXKQX committed Jul 6, 2024
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  6. homogeneize (name as class attribute)

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Commits on Jul 8, 2024

  1. new input config

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  2. new default

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  3. Merge branch 'develop' into fix/global-version

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    JPXKQX authored Jul 8, 2024
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  4. feat: Initial implementation of global graphs 

    Co-authored by: Mario Santa Cruz <[email protected]>
    @theissenhelen
    theissenhelen committed Jul 8, 2024
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  5. add cli command

    @JPXKQX @theissenhelen
    JPXKQX authored and theissenhelen committed Jul 8, 2024
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  6. Ignore .pt files

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  7. run pre-commit

    @JPXKQX @theissenhelen
    JPXKQX authored and theissenhelen committed Jul 8, 2024
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  8. docstring + log erros

    @JPXKQX @theissenhelen
    JPXKQX authored and theissenhelen committed Jul 8, 2024
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  9. initial tests

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  10. feat: initial version of AttributeBuilder

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  11. refactor: separate into node edge attribute builders

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  12. feat: edge_length moved to edges/attributes.py

    @JPXKQX @theissenhelen
    JPXKQX authored and theissenhelen committed Jul 8, 2024
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  13. remove __init__

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    JPXKQX authored and theissenhelen committed Jul 8, 2024
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  14. bugfix (encoder edge lengths) + refector

    @JPXKQX @theissenhelen
    JPXKQX authored and theissenhelen committed Jul 8, 2024
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  15. feat: support path and dict for config argument

    @JPXKQX @theissenhelen
    JPXKQX authored and theissenhelen committed Jul 8, 2024
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  16. fix: error

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    JPXKQX authored and theissenhelen committed Jul 8, 2024
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  17. refactor: naming

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  18. fix: pre-commit

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  19. feat: builders icosahedral

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  20. feat: Add icosahedral graph generation 

    Co-authored-by: Mario Santa Cruz <[email protected]>
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  21. refactor: remove create_shere

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  22. feat: Icosahedral edge builder

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  23. feat: hexagonal graph generation 

    Co-authored-by: Mario Santa Cruz <[email protected]>
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  24. feat: hexagonal builders

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  25. fix: AOI not implemented yet

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  26. fix: abstractmethod and renaming

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  27. chore: add dependencies

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  28. test: add tests for trimesh

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  29. test: add tests for hex (h3)

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  30. fix: imports

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  31. fix: output type

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  32. refactor: delete unused file

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  33. refactor: renaming and positioning

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  34. feat: ensure src and dst always the same

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  35. fix: imports

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  36. fix: edge_name not supported

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  37. test: add tests for TriIcosahedralEdges

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  38. fix: assert missing for Hexagonal edges

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  39. test: hexagonal edges

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  40. fix: avoid same name

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  41. fix: imports

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  42. fix: conflicts

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  43. Merge branch 'develop' into 6-generate-graphs-from-icosahedral-meshes

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Commits on Jul 9, 2024

  1. update tests

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  2. Merge branch 'develop' into 6-generate-graphs-from-icosahedral-meshes

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  3. Merge branch '6-generate-graphs-from-icosahedral-meshes' into 7-local… 

    …-area-modelling-graphs
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  4. Include xhops to hexagonal edges

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  5. Merge pull request #14 from ecmwf/hotfix/config_node_name 

    Hotfix: nodes config name

Co-authored-by: <[email protected]>
Co-authored-by: <[email protected]>
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  6. Merge remote-tracking branch 'origin/develop' into 6-generate-graphs-… 

    …from-icosahedral-meshes
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  7. Merge remote-tracking branch 'origin/develop' into 6-generate-graphs-… 

    …from-icosahedral-meshes
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  8. docs: update docstrings

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  9. Merge remote-tracking branch 'origin/develop' into 7-local-area-model… 

    …ling-graphs
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Commits on Jul 10, 2024

  1. fix: update attribute name

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Commits on Jul 11, 2024

  1. refactor: rename multiscale nodes

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  2. refactor: rename icosahedral nodes

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  3. Merge remote-tracking branch 'origin/6-generate-graphs-from-icosahedr… 

    …al-meshes' into 7-local-area-modelling-graphs
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  4. refactor: LimitedArea prefix

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    theissenhelen committed Jul 11, 2024
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  5. feat: add aoi_mask_builder to edge builder

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Commits on Jul 26, 2024

  1. Merge remote-tracking branch 'origin/develop' into 7-local-area-model… 

    …ling-graphs

Co-authored-by: Helen Theissen <[email protected]>
    @JPXKQX @theissenhelen
    JPXKQX and theissenhelen committed Jul 26, 2024
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Commits on Aug 5, 2024

  1. Merge branch 'develop' into 7-local-area-modelling-graphs

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Commits on Aug 6, 2024

  1. Merge branch 'develop' into 7-local-area-modelling-graphs

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  2. docs & default values

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  3. create LimitedAreaHEALPixNodes

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    JPXKQX committed Aug 6, 2024
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  4. fix: import HEALPixNodes

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  5. fix: avoid runtimeError when deleting a key

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  6. fix: set config arg to pathlib.Path

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  7. more logging

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  8. create LimitedAreaIcoshaderalNodes

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  9. refactor LimiteAreaIcosahedralNodes class

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  10. types & docstrings

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Commits on Aug 7, 2024

  1. fix(lam): icosahedral nodes in lam

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  2. fix: style

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    JPXKQX committed Aug 7, 2024
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  3. feat: icosahedral & hexagonal lam multiscale edges for lam

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    JPXKQX committed Aug 7, 2024
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Commits on Aug 8, 2024

  1. fixs(docs): typo

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Commits on Aug 9, 2024

  1. fix: remove redundant code

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  2. refactor: remove edge attr computation during graph creation

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  3. refactor: split builder.py in several files

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    JPXKQX committed Aug 9, 2024
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  4. fix: rename node builder class

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    JPXKQX committed Aug 9, 2024
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  5. Merge branch 'develop' into 7-local-area-modelling-graphs

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  6. fix: test imports

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  7. Updated CHANGELOG.md

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  8. fix: imports

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    JPXKQX committed Aug 9, 2024
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  9. fix: move masks.py to generate/

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  10. refactor: update resolutions argument to resolution

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  11. Merge branch 'develop' into 7-local-area-modelling-graphs

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Commits on Aug 15, 2024

  1. Merge branch 'develop' into 7-local-area-modelling-graphs

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Commits on Aug 19, 2024

  1. Merge 'develop' branch into 7-local-area-modelling-graphs

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  2. fix: import annotations (py3.9)

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    JPXKQX committed Aug 19, 2024
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  3. tests: new tests for CutOutZarrDatasetNodes

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    JPXKQX committed Aug 19, 2024
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  4. test: new test for KNNAreaMaskBuilder

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    JPXKQX committed Aug 19, 2024
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Commits on Aug 21, 2024

  1. feat: mask_attr_name should be optional

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    JPXKQX committed Aug 21, 2024
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  2. refactor: KNNAreaMAskBuilder

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    JPXKQX committed Aug 21, 2024
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Commits on Aug 23, 2024

  1. Merge branch 'develop' into 7-local-area-modelling-graphs

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Commits on Sep 2, 2024

  1. docs: remove duplication

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    theissenhelen committed Sep 2, 2024
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  2. refactor: remove second return

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    theissenhelen committed Sep 2, 2024
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Commits on Sep 3, 2024

  1. Merge branch 'develop' into 7-local-area-modelling-graphs

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  2. Merge branch '7-local-area-modelling-graphs' of github.com:ecmwf/anem… 

    …oi-graphs into 7-local-area-modelling-graphs
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  3. docs: output folder missing

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    theissenhelen committed Sep 3, 2024
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  4. docs: update changelog

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    theissenhelen committed Sep 3, 2024
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Commits on Sep 11, 2024

  1. docs: add PR to changelog

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    theissenhelen committed Sep 11, 2024
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  2. docs: added missing PRs in changelog

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    theissenhelen committed Sep 11, 2024
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Commits on Sep 12, 2024

  1. fix: address @mchantry's comments

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  2. fix: rename according to the refinement

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    JPXKQX committed Sep 12, 2024
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  3. Merge branch '7-local-area-modelling-graphs' of github.com:ecmwf/anem… 

    …oi-graphs into 7-local-area-modelling-graphs
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Commits on Sep 13, 2024

  1. fix: edge case 1 set of nodes with 1 node attribute

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    JPXKQX committed Sep 13, 2024
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Commits on Sep 16, 2024

  1. fix: delete repeated code

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    JPXKQX committed Sep 16, 2024
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Commits on Sep 17, 2024

  1. [Feature] Support node masking in edge builder (#50) 

    * feat: support node masking in edge builder

---------

Co-authored-by: Helen Theissen <[email protected]>
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    JPXKQX and theissenhelen authored Sep 17, 2024
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Commits on Oct 3, 2024

  1. Merge branch 'develop' into 7-local-area-modelling-graphs

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