Removing host removal from SR RNA

Removing host genome channel from short read metagenomic workflow. May return in the future when a splice aware aligner is used to remove host RNA
edwardbirdlab · May 3, 2024 · 729c893 · 729c893
1 parent d40e6ba
commit 729c893
Showing 1 changed file with 0 additions and 1 deletion.
diff --git a/workflows/SHORT_READ_METAGENOMIC_RNA.nf b/workflows/SHORT_READ_METAGENOMIC_RNA.nf
@@ -19,7 +19,6 @@ include { CARD_READS_ONLY as CARD_READS_ONLY } from '../subworkflows/CARD_READS_
 workflow SHORT_READ_METAGENOMIC_RNA {
     take:
         fastqs_short_raw      //    channel: [val(sample), [fastq_1, fastq_2]]
-        host_gen_fasta        //    channel: channel: [val(sample), fasta]
 
     main:
         READ_QC_SR(fastqs_short_raw)