This repository is associated with the following manuscript and the corresponding dataset.
This repository contains the preprocessing and analysis code needed to assess the reliability of spinal cord resting-state networks as presented in above-mentioned manuscript. Note that the functions are organized according to the organization of the manuscript.
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MATLAB, version 2018a or higher
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Spinal Cord Toolbox(SCT), version 4.2.2 or higher
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FSL, version 5.0 or higher
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AFNI, version 22.1.09n
distributionPlot : Jonas (2021). Violin Plots for plotting multiple distributions (distributionPlot.m) (https://www.mathworks.com/matlabcentral/fileexchange/23661-violin-plots-for-plotting-multiple-distributions-distributionplot-m), MATLAB Central File Exchange.
For preprocessing and calculation of results, SCT version 4.2.2, FSL version 6.0.3, and MATLAB version 2021a were used.
- Kaptan, M., Horn, U., Vannesjo, S. J., Mildner, T., Weiskopf, N., Finsterbusch, J., Brooks, J. C. W., & Eippert, F. (2023). Reliability of resting-state functional connectivity in the human spinal cord: Assessing the impact of distinct noise sources. NeuroImage, 120152. https://doi.org/10.1016/j.neuroimage.2023.120152
- https://openneuro.org/datasets/ds004386