added ci

elixir-cloud-aai · Jul 9, 2024 · e91cf6c · e91cf6c
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diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -0,0 +1,66 @@
+name: GitHub CI/CD Workflow	
+
+on: [push, pull_request]	
+
+jobs:	
+  build:	
+
+    runs-on: ubuntu-latest	
+    container:	
+      image: ubuntu:24.04	
+    env:	
+      OPENSSL_DIR: /usr/include/openssl	
+      OPENSSL_LIB_DIR: /usr/lib/x86_64-linux-gnu	
+      OPENSSL_INCLUDE_DIR: /usr/include/openssl	
+
+    steps:	
+    - name: Install dependencies	
+      run: |	
+        apt-get update	
+        apt-get install -y curl git build-essential libssl-dev 	
+        
+    - uses: actions/checkout@v4 # checkout the repository	
+    - name: Install Rust	
+      run: |
+        curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y
+        echo "$HOME/.cargo/bin" >> $GITHUB_PATH
+
+
+    - name: Install Node.js # required for build-models.sh
+      run: |
+        curl -fsSL https://deb.nodesource.com/setup_22.x | bash -
+        apt-get install -y nodejs
+
+    - name: Set up JDK 11 # required for build-models.sh	
+      uses: actions/setup-java@v3
+      with:	
+        distribution: 'adopt'	
+        java-version: '11'	
+
+    - name: Install Go	
+      uses: actions/setup-go@v4
+      with:	
+        go-version: '^1.22'  	
+    - name: Install Funnel	
+      run: |	
+          if [ -d "funnel" ]; then rm -Rf funnel; fi	
+          git clone https://github.com/ohsu-comp-bio/funnel.git	
+          cd funnel && make && make install && cd ..	
+    - uses: actions/checkout@v4 # checkout the repository	
+    - name: Build models	
+      run: |	
+        bash ./build-models.sh	
+    - name: Build	
+      run: |	
+        cargo build --verbose	
+    - name: Run tests	
+      run: |	
+        bash ./run-tests.sh	
+    - name: Lint	
+      run: |	
+        cargo clippy -- -D warnings	
+    - name: Format	
+      run: |	
+        cargo fmt -- ./lib/src/serviceinfo/models/*.rs # workaround to fix autogenerated code formatting	
+        cargo fmt -- ./lib/src/tes/models/*.rs	
+        cargo fmt -- --check
diff --git a/.github/workflows/local.yml b/.github/workflows/local.yml
@@ -0,0 +1,115 @@
+name: Local CI/CD Workflow	
+
+on: workflow_dispatch
+
+jobs:	
+  build:	
+
+    runs-on: ubuntu-latest	
+    container:	
+      image: ubuntu:24.04	
+    env:	
+      OPENSSL_DIR: /usr/include/openssl	
+      OPENSSL_LIB_DIR: /usr/lib/x86_64-linux-gnu	
+      OPENSSL_INCLUDE_DIR: /usr/include/openssl	
+
+    steps:	
+
+    - name: Cache Rust dependencies	
+      uses: actions/cache@v3
+      with:	
+        path: ~/.cargo	
+        key: ${{ runner.os }}-cargo-${{ hashFiles('**/Cargo.lock') }}	
+        restore-keys: ${{ runner.os }}-cargo-	
+
+    - name: Cache Rust build output	
+      uses: actions/cache@v3
+      with:	
+        path: target	
+        key: ${{ runner.os }}-build-${{ hashFiles('**/Cargo.lock') }}	
+        restore-keys: ${{ runner.os }}-build-	
+
+    - name: Cache Node.js dependencies	
+      uses: actions/cache@v3	
+      with:	
+        path: ~/.npm	
+        key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}	
+        restore-keys: ${{ runner.os }}-node-	
+
+    - name: Cache Maven dependencies	
+      uses: actions/cache@v3
+      with:	
+        path: ~/.m2/repository	
+        key: ${{ runner.os }}-maven-${{ hashFiles('**/pom.xml') }}	
+        restore-keys: ${{ runner.os }}-maven-	
+
+    - name: Cache Go modules	
+      uses: actions/cache@v3
+      with:	
+        path: ~/.cache/go-build	
+        key: ${{ runner.os }}-go-${{ hashFiles('**/go.sum') }}	
+        restore-keys: ${{ runner.os }}-go-	
+
+    - name: Cache Funnel dependencies	
+      uses: actions/cache@v3
+      with:	
+        path: ~/funnel/build	
+        key: ${{ runner.os }}-funnel-${{ hashFiles('**/funnel/*') }}	
+        restore-keys: ${{ runner.os }}-funnel-	
+
+    - name: Install Rust	
+      run: |	
+        apt-get update	
+        apt-get install -y curl git build-essential libssl-dev 	
+        if ! command -v rustup &> /dev/null # might not be installed while executing using `act`	
+        then	
+            curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y	
+            . $HOME/.cargo/env	
+        fi	
+        rustup update stable	
+
+    - name: Install Node.js # required for build-models.sh
+      run: |
+        curl -fsSL https://deb.nodesource.com/setup_22.x | bash -
+        apt-get install -y nodejs
+
+    - name: Set up JDK 11 # required for build-models.sh	
+      uses: actions/setup-java@v3
+      with:	
+        distribution: 'adopt'	
+        java-version: '11'	
+
+    - name: Install Go	
+      uses: actions/setup-go@v4
+      with:	
+        go-version: '^1.22'  	
+    - name: Install Funnel	
+      run: |	
+          if [ -d "funnel" ]; then rm -Rf funnel; fi	
+          git clone https://github.com/ohsu-comp-bio/funnel.git	
+          cd funnel && make && make install && cd ..	
+    - uses: actions/checkout@v4 # checkout the repository	
+    - name: Build models	
+      run: |	
+        . $HOME/.cargo/env	
+        bash ./build-models.sh	
+    - name: Build	
+      run: |	
+        . $HOME/.cargo/env	
+        cargo build --verbose	
+    - name: Run tests	
+      run: |	
+        . $HOME/.cargo/env	
+        bash ./run-tests.sh	
+    - name: Lint	
+      run: |	
+        . $HOME/.cargo/env	
+        cargo clippy -- -D warnings	
+    - name: Format	
+      run: |	
+        . $HOME/.cargo/env	
+        # rustup install nightly – fails for some reason	
+        # rustup default nightly	
+        cargo fmt -- ./lib/src/serviceinfo/models/*.rs # workaround to fix autogenerated code formatting	
+        cargo fmt -- ./lib/src/tes/models/*.rs	
+        cargo fmt -- --check # --config-path ./rustfmt.toml