chore: add types and refactor mypy.ini

mypy.ini

@@ -1,6 +1,18 @@
 [mypy]
+disable_error_code = attr-defined
+
+[mypy-foca.*]
 ignore_missing_imports = True
 disable_error_code = attr-defined
-disable_error_code = no-redef
 
-# [mypy-pro_wes.*]
+[mypy-celery.*]
+ignore_missing_imports = True
+
+[mypy-connexion.*]
+ignore_missing_imports = True
+
+[mypy-pymongo.*]
+ignore_missing_imports = True
+
+[mypy-bson.objectid]
+ignore_missing_imports = True

pro_wes/tasks/track_run_progress.py

@@ -2,7 +2,7 @@
 
 import logging
 from time import sleep
-from typing import Dict, Optional, Mapping
+from typing import Dict, Optional
 
 from foca.database.register_mongodb import _create_mongo_client
 from foca.models.config import Config

requirements_dev.txt

@@ -6,5 +6,6 @@ pylint>=2.15.5,<3
 pytest>=7.2.0,<8
 python-semantic-release>=7.32.2,<8
 mypy~=1.8
-types-setuptools
-types-requests
+types-setuptools~=69.0.0.20240106
+types-requests~=2.31.0.20240106
+types-docutils~=0.20.0.20240106