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Issues list

Pileup variant process stuck on specific chunks
#224 opened Oct 11, 2024 by antoniognmk
A list of all the SNPs on a chromosome, including the bases and the depth of coverage from the VCF file question Further information is requested
#223 opened Oct 4, 2024 by Szuchieh17
2
Valid SNPIDs missing in vcf file
#221 opened Sep 18, 2024 by matomol
3
Error: An unexpected error occurred while trying to open file snpEff.jar
#216 opened Sep 6, 2024 by NorikazuHARA
2
Running on Kubernetes/Seqera question Further information is requested
#213 opened Sep 3, 2024 by gezthxbio
1
Collection of user data should require opt in consent
#207 opened Aug 7, 2024 by k1sauce
Running on AWS Batch question Further information is requested
#204 opened Aug 1, 2024 by k1sauce
1
Sniffles failing to complete with no error
#192 opened Jun 10, 2024 by parkerpayne
11
variant calling failed at concat_refined_snp step
#191 opened Jun 6, 2024 by samuelecancellieri
1
Missing output file(s) clair_output/tmp/CHUNK_LIST expected by process snp:make_chunks (1)
#190 opened Jun 6, 2024 by nikelau
2
Error executing process > 'mod:modkit_phase (1)'
#184 opened May 23, 2024 by cihaterdogan
25
add option to force re-alignment
#178 opened May 6, 2024 by flokraft85
1
error pulling singularity image
#175 opened Apr 23, 2024 by selmapichot
6
Enable running --str (or other subcomponents of the pipeline) more modularly
#169 opened Apr 4, 2024 by ilivyatan
1
snpeff fails with segfault
#164 opened Mar 22, 2024 by trum994
7
minimap2 alignment step fails because of samtools sort question Further information is requested
#145 opened Feb 16, 2024 by trum994
6
segfault
#144 opened Feb 15, 2024 by VICTO160
5
Process bam_ingress:minimap2_alignment (1) terminated with an error exit status (137) question Further information is requested
#133 opened Jan 22, 2024 by Yoon90
4
Schema not compatible with nf-tower
#87 opened Sep 15, 2023 by phillip-richmond-alamya
1
[Bug]: sniffles --output-rnames used with duplex reads breaks VCF format bug Something isn't working
#44 opened Jun 5, 2023 by mp15
3
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