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28 Open 32 Closed
28 Open 32 Closed
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Issues list

double check if we control all stochastic components using a fixed random seed of 42 enhancement New feature or request
#69 opened Dec 2, 2024 by sreichl
ggrepel text for labelling of categorical Metadata in 2D plots enhancement New feature or request
#68 opened Nov 26, 2024 by sreichl
@sreichl
Make default scatterplot markersize smaller
#66 opened Nov 19, 2024 by bednarsky
1
3
validation_external.py: Index mismatch between clustering results and metadata introduces NaNs documentation Improvements or additions to documentation
#61 opened Nov 18, 2024 by bednarsky
1
4
plot_heatmap Error: cannot take a sample larger than the population when 'replace = FALSE' bug Something isn't working
#59 opened Nov 16, 2024 by bednarsky
1
5
distance_matrix.py - avoid that config:heatmap:n_observations default causes error enhancement New feature or request
#58 opened Nov 15, 2024 by bednarsky
1
1
plot_indices Error: libicui18n.so.58: cannot open shared object file bug Something isn't working
#57 opened Nov 15, 2024 by bednarsky
1
2
improve interactive plots for numerical metadata enhancement New feature or request
#55 opened Oct 9, 2024 by sreichl
2 tasks
@sreichl
clustification v1 enhancement New feature or request
#54 opened Jun 22, 2024 by sreichl
5 tasks
@sreichl
clustification: train/predict on approximated manifold instead of original space enhancement New feature or request
#48 opened May 11, 2024 by sreichl
@sreichl
clustification: implement XGBoost enhancement New feature or request
#47 opened May 11, 2024 by sreichl
@sreichl
consider adding CartoGRAPHs for visualization and DataDiVR export for VR based analysis enhancement New feature or request
#42 opened Jan 27, 2024 by sreichl
2 tasks
@sreichl
diagnostic plot of all aggregated clustering results enhancement New feature or request
#41 opened Dec 20, 2023 by sreichl
1 task
@sreichl
1
improve data loading speed with Dask or NumPy enhancement New feature or request
#37 opened Dec 15, 2023 by sreichl
@sreichl
reimplement internal cluster indices supporting different metrics and to improve performance enhancement New feature or request
#33 opened Oct 3, 2023 by sreichl
@sreichl
add Variation of Information (VI) and Split/Join as external indices enhancement New feature or request
#31 opened Sep 27, 2023 by sreichl
@sreichl
implement Manifold trustworthiness enhancement New feature or request
#30 opened Sep 22, 2023 by sreichl
@sreichl
implement significance analysis for clustering enhancement New feature or request
#29 opened Sep 18, 2023 by sreichl
@sreichl
1
clustification: add visualization/diagnostics of performance/convergence over time enhancement New feature or request
#28 opened Sep 13, 2023 by sreichl
@sreichl
1
Resampling to evaluate clustering stability enhancement New feature or request
#27 opened Sep 13, 2023 by bednarsky
@sreichl
clustree: investigate and implement automatic sc3 stability scoring enhancement New feature or request
#24 opened Sep 6, 2023 by sreichl
@sreichl
implement consensus cluster calling enhancement New feature or request
#22 opened Aug 29, 2023 by sreichl
@sreichl
1
implement meta visualization as an aggregation of all methods (PCA, densMAP, UMAP, …) enhancement New feature or request
#16 opened Aug 26, 2023 by sreichl
@sreichl
add Dynamic visualization of high-dimensional data enhancement New feature or request
#15 opened Aug 26, 2023 by sreichl
@sreichl
implement partition based clustering enhancement New feature or request
#14 opened Aug 26, 2023 by sreichl
@sreichl
ProTip! no:milestone will show everything without a milestone.