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Automatic readme update
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actions-user authored and jamesmbaazam committed Oct 11, 2023
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7 changes: 4 additions & 3 deletions README.md
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Expand Up @@ -69,8 +69,8 @@ library("epichains")
- `simulate_tree()`: simulates transmission chains using an initial
number of cases and information on the offspring distribution. This
function returns an object with columns that track information on who
infected whom, the generation of infection, and optionally, the time
of infection.
infected whom, the generation of infection and, if a serial interval
is given, the time of infection.

- `simulate_summary()`: simulates a vector of transmission chain sizes
or lengths using an initial number of cases and information on the
Expand All @@ -81,7 +81,8 @@ library("epichains")
initial population size and information on the offspring distribution.
You can also specify a given level of pre-existing immunity. This
function returns an object with columns that track information on who
infected whom, the generation of infection, and the time of infection.
infected whom, the generation of infection and, if a serial interval
is given, the time of infection.

- `likelihood()`: calculates the loglikelihood (or likelihood, depending
on the value of `log`) of observing a vector of transmission chain
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