Skip to content

Commit

Permalink
Fix snapshots
Browse files Browse the repository at this point in the history
  • Loading branch information
@jamesmbaazam
jamesmbaazam committed Dec 1, 2023
1 parent adb123f commit 6014763
Showing 1 changed file with 90 additions and 90 deletions.
180 changes: 90 additions & 90 deletions tests/testthat/_snaps/epichains.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -12,8 +12,8 @@
< tree tail >
[1] sim_id infector_id generation time
<0 rows> (or 0-length row.names)
sim_id infector_id generation time
1 1 NA 1 0
Number of infectors (known): 0
Number of generations: 1
Use `as.data.frame(<object_name>)` to view the full output in the console.
Expand All @@ -27,24 +27,24 @@
< tree head (from first known infector) >
sim_id ancestor generation time
2 2 1 2 42.57973
3 3 2 3 42.80500
4 4 2 3 42.70415
5 5 4 4 43.87477
6 6 4 4 44.00812
7 7 3 4 78.73481
sim_id infector_id generation time
2 2 1 2 42.57973
3 3 2 3 42.80500
4 4 2 3 42.70415
5 5 4 4 43.87477
6 6 4 4 44.00812
7 7 3 4 78.73481
< tree tail >
sim_id ancestor generation time
7 7 3 4 78.73481
8 8 5 5 47.03948
9 9 6 5 45.38534
10 10 9 6 46.14505
11 11 8 6 48.03103
12 12 7 5 81.49185
Number of ancestors (known): 9
sim_id infector_id generation time
7 7 3 4 78.73481
8 8 5 5 47.03948
9 9 6 5 45.38534
10 10 9 6 46.14505
11 11 8 6 48.03103
12 12 7 5 81.49185
Number of infectors (known): 9
Number of generations: 6
Use `as.data.frame(<object_name>)` to view the full output in the console.

Expand All @@ -57,25 +57,25 @@
< tree head (from first known infector) >
chain_id sim_id ancestor generation
3 1 2 1 2
6 2 2 1 2
4 1 3 1 2
7 2 3 1 2
5 1 4 1 2
11 2 4 2 3
infectee_id sim_id infector_id generation
3 1 2 1 2
4 2 2 1 2
5 1 3 1 2
6 2 3 1 2
7 1 4 1 2
8 2 4 2 3
< tree tail >
chain_id sim_id ancestor generation
9 1 6 4 3
10 1 7 4 3
15 2 7 6 4
16 2 8 6 4
14 1 8 7 4
17 2 9 8 5
infectee_id sim_id infector_id generation
12 1 6 4 3
13 1 7 4 3
14 2 7 6 4
15 2 8 6 4
16 1 8 7 4
17 2 9 8 5
Chains simulated: 2
Number of ancestors (known): 7
Number of infectors (known): 7
Number of generations: 5
Use `as.data.frame(<object_name>)` to view the full output in the console.

Expand All @@ -88,23 +88,23 @@
< tree head (from first known infector) >
chain_id sim_id ancestor generation time
11 1 2 1 2 3
12 2 2 1 2 3
13 3 2 1 2 3
15 4 2 1 2 3
17 5 2 1 2 3
20 6 2 1 2 3
infectee_id sim_id infector_id generation time
11 1 2 1 2 3
12 2 2 1 2 3
13 3 2 1 2 3
14 4 2 1 2 3
15 5 2 1 2 3
16 6 2 1 2 3
< tree tail >
chain_id sim_id ancestor generation time
131 10 19 9 4 9
81 2 20 6 4 9
103 4 20 9 4 9
104 4 21 9 4 9
105 4 22 9 4 9
106 4 23 9 4 9
infectee_id sim_id infector_id generation time
138 10 19 9 4 9
139 2 20 6 4 9
140 4 20 9 4 9
141 4 21 9 4 9
142 4 22 9 4 9
143 4 23 9 4 9
Chains simulated: 10
Number of infectors (known): 9
Number of generations: 5
Expand Down Expand Up @@ -141,13 +141,13 @@
Output
< tree head (from first known infector) >
sim_id ancestor generation time
2 2 1 2 42.57973
3 3 2 3 42.80500
4 4 2 3 42.70415
5 5 4 4 43.87477
6 6 4 4 44.00812
7 7 3 4 78.73481
sim_id infector_id generation time
2 2 1 2 42.57973
3 3 2 3 42.80500
4 4 2 3 42.70415
5 5 4 4 43.87477
6 6 4 4 44.00812
7 7 3 4 78.73481

---

Expand All @@ -156,13 +156,13 @@
Output
< tree head (from first known infector) >
chain_id sim_id ancestor generation
3 1 2 1 2
6 2 2 1 2
4 1 3 1 2
7 2 3 1 2
5 1 4 1 2
11 2 4 2 3
infectee_id sim_id infector_id generation
3 1 2 1 2
4 2 2 1 2
5 1 3 1 2
6 2 3 1 2
7 1 4 1 2
8 2 4 2 3

---

Expand All @@ -171,13 +171,13 @@
Output
< tree head (from first known infector) >
chain_id sim_id ancestor generation time
11 1 2 1 2 3
12 2 2 1 2 3
13 3 2 1 2 3
15 4 2 1 2 3
17 5 2 1 2 3
20 6 2 1 2 3
infectee_id sim_id infector_id generation time
11 1 2 1 2 3
12 2 2 1 2 3
13 3 2 1 2 3
14 4 2 1 2 3
15 5 2 1 2 3
16 6 2 1 2 3

---

Expand All @@ -187,8 +187,8 @@
< tree tail >
[1] sim_id infector_id generation time
<0 rows> (or 0-length row.names)
sim_id infector_id generation time
1 1 NA 1 0

---

Expand All @@ -198,13 +198,13 @@
< tree tail >
sim_id ancestor generation time
7 7 3 4 78.73481
8 8 5 5 47.03948
9 9 6 5 45.38534
10 10 9 6 46.14505
11 11 8 6 48.03103
12 12 7 5 81.49185
sim_id infector_id generation time
7 7 3 4 78.73481
8 8 5 5 47.03948
9 9 6 5 45.38534
10 10 9 6 46.14505
11 11 8 6 48.03103
12 12 7 5 81.49185

---

Expand All @@ -214,13 +214,13 @@
< tree tail >
chain_id sim_id ancestor generation
9 1 6 4 3
10 1 7 4 3
15 2 7 6 4
16 2 8 6 4
14 1 8 7 4
17 2 9 8 5
infectee_id sim_id infector_id generation
12 1 6 4 3
13 1 7 4 3
14 2 7 6 4
15 2 8 6 4
16 1 8 7 4
17 2 9 8 5

---

Expand All @@ -230,11 +230,11 @@
< tree tail >
chain_id sim_id ancestor generation time
131 10 19 9 4 9
81 2 20 6 4 9
103 4 20 9 4 9
104 4 21 9 4 9
105 4 22 9 4 9
106 4 23 9 4 9
infectee_id sim_id infector_id generation time
138 10 19 9 4 9
139 2 20 6 4 9
140 4 20 9 4 9
141 4 21 9 4 9
142 4 22 9 4 9
143 4 23 9 4 9

0 comments on commit 6014763

Please sign in to comment.