update output fig.path in extract-bias vignette

epiverse-trace · Jan 22, 2025 · bdba0f4 · bdba0f4
1 parent dcac270
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Showing 2 changed files with 6 additions and 5 deletions.
diff --git a/vignettes/articles/_extract-bias.Rmd.orig b/vignettes/articles/_extract-bias.Rmd.orig
@@ -6,7 +6,8 @@ title: "{epiparameter} Extraction Bias Analysis"
 knitr::opts_chunk$set(
   collapse = TRUE,
   comment = "#>",
-  fig.width = 8
+  fig.width = 8,
+  fig.path = ""
 )
 ```
 

diff --git a/vignettes/articles/extract-bias.Rmd b/vignettes/articles/extract-bias.Rmd
@@ -170,7 +170,7 @@ ggplot(data = results) +
   )
 ```
 
-![Parameter estimation bias facetted by distribution. Parameter 1 is either the shape parameter, for gamma and Weibull distributions, or meanlog for the lognormal distribution. Parameter 2 is either the scale parameter for gamma and Weibull distributions, or sdlog for the lognormal distribution.](figure/plot-results-percentiles-1.png)
+![Parameter estimation bias facetted by distribution. Parameter 1 is either the shape parameter, for gamma and Weibull distributions, or meanlog for the lognormal distribution. Parameter 2 is either the scale parameter for gamma and Weibull distributions, or sdlog for the lognormal distribution.](plot-results-percentiles-1.png)
 
 ### Extraction by median and range
 
@@ -297,7 +297,7 @@ ggplot(data = results) +
   )
 ```
 
-![Parameter extraction bias. Parameter 1 is either the shape parameter, for gamma and Weibull distributions, or meanlog for the lognormal distribution. Parameter 2 is either the scale parameter for gamma and Weibull distributions, or sdlog for the lognormal distribution.](figure/plot-results-med-range-1.png)
+![Parameter extraction bias. Parameter 1 is either the shape parameter, for gamma and Weibull distributions, or meanlog for the lognormal distribution. Parameter 2 is either the scale parameter for gamma and Weibull distributions, or sdlog for the lognormal distribution.](plot-results-med-range-1.png)
 
 ## Extraction precision
 
@@ -385,7 +385,7 @@ ggplot(data = results) +
   )
 ```
 
-![Parameter extraction precision, facetted by distribution. Parameter 1 is either the shape parameter, for gamma and Weibull distributions, or meanlog for the lognormal distribution. Parameter 2 is either the scale parameter for gamma and Weibull distributions, or sdlog for the lognormal distribution.](figure/plot-results-1.png)
+![Parameter extraction precision, facetted by distribution. Parameter 1 is either the shape parameter, for gamma and Weibull distributions, or meanlog for the lognormal distribution. Parameter 2 is either the scale parameter for gamma and Weibull distributions, or sdlog for the lognormal distribution.](plot-results-1.png)
 
 ### Extraction by median and range
 
@@ -493,7 +493,7 @@ ggplot(data = results) +
   )
 ```
 
-![Parameter extraction precision, facetted by distribution. Parameter 1 is either the shape parameter, for gamma and Weibull distributions, or meanlog for the lognormal distribution. Parameter 2 is either the scale parameter for gamma and Weibull distributions, or sdlog for the lognormal distribution.](figure/plot-estim-var-range-1.png)
+![Parameter extraction precision, facetted by distribution. Parameter 1 is either the shape parameter, for gamma and Weibull distributions, or meanlog for the lognormal distribution. Parameter 2 is either the scale parameter for gamma and Weibull distributions, or sdlog for the lognormal distribution.](plot-estim-var-range-1.png)
 
 ::: {.alert .alert-primary}
 From the plots in this vignette, the bias is low and precision is high