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Add test suite #93

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Add test suite #93

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jamesmbaazam
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@jamesmbaazam jamesmbaazam commented Jul 6, 2023

This PR will:

It is a work in progress and will help improve the coverage of the package.

I am looping in @joshwlambert as we are working on this together.

tracelac and others added 30 commits August 8, 2022 18:45
* arreglo carpetas R/stanmodels

* Funciones finales pendientes a modificación

* Delete Funciones eliminadas.docx

* Delete Explicación del código del paquete SEROFOI.docx

* Documentación en inglés y español

* Documentación lista

* modify package structure

* modify package structure

* modify names and folder test

* Creation of general modules and revision of functions

* refactoring visualization functions and define some general pck structure

* update readme file

* update readme file

* general settings

* modify dependecies, document and name functions

Co-authored-by: Zulma M. Cucunubá <[email protected]>
Co-authored-by: megamezl <[email protected]>
Co-authored-by: megamezl <[email protected]>
@ntorresd
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#109 is related to this PR. Please check commit 034e63e.

@ntorresd ntorresd changed the base branch from main to dev August 17, 2023 12:56
ntorresd and others added 2 commits August 22, 2023 18:09
* remove serodata .Rdata and .Rd files

* remove R/serodata.R

* doc: update functions  documentation replacing  for  in examples

* doc: update serofoi logo

* doc: update README and vignettes
This commit changes the removed preloaded dataset `serodata` for the identical `chagas2012`.

* fix: minor correction to test_modelling
@ntorresd
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This PR should be merged after #83 .

jpavlich and others added 17 commits August 24, 2023 10:09
 Simplify fit_seromodel() output and related refactorizations
…#59)

* fix: add exception to function plot_foi() to plot a FOI trend with different length along with the data for the case when their sizes don't coincide

* clean test_visualisation

* feature: add three functions to simulate datasets. get_sim_counts() generates a list with simulated counts by age following a binomial distribution. generate_sim_data() uses the counts generated by get_sim_counts() to create a dataframe with the necessary structure to use other functions of the package. group_sim_data() serves to group the previously generated dataset by age group; right now it groups the data by periods of 5 years.

* add test_simulate_data to test the data simulation functions in the seroprevalence_data module
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