Add test suite #93
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Add test suite #93
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creating base line of package
…nto dev-feature-strmodel
…rofoi into dev-feature-strmodel-miguel
* arreglo carpetas R/stanmodels * Funciones finales pendientes a modificación * Delete Funciones eliminadas.docx * Delete Explicación del código del paquete SEROFOI.docx * Documentación en inglés y español * Documentación lista * modify package structure * modify package structure * modify names and folder test * Creation of general modules and revision of functions * refactoring visualization functions and define some general pck structure * update readme file * update readme file * general settings * modify dependecies, document and name functions Co-authored-by: Zulma M. Cucunubá <[email protected]> Co-authored-by: megamezl <[email protected]> Co-authored-by: megamezl <[email protected]>
…ction separation by model.
… .RDS and updates test_visualization accordingly
* remove serodata .Rdata and .Rd files * remove R/serodata.R * doc: update functions documentation replacing for in examples * doc: update serofoi logo * doc: update README and vignettes This commit changes the removed preloaded dataset `serodata` for the identical `chagas2012`. * fix: minor correction to test_modelling
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This PR should be merged after #83 . |
Simplify fit_seromodel() output and related refactorizations
…#59) * fix: add exception to function plot_foi() to plot a FOI trend with different length along with the data for the case when their sizes don't coincide * clean test_visualisation * feature: add three functions to simulate datasets. get_sim_counts() generates a list with simulated counts by age following a binomial distribution. generate_sim_data() uses the counts generated by get_sim_counts() to create a dataframe with the necessary structure to use other functions of the package. group_sim_data() serves to group the previously generated dataset by age group; right now it groups the data by periods of 5 years. * add test_simulate_data to test the data simulation functions in the seroprevalence_data module
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This PR will:
It is a work in progress and will help improve the coverage of the package.
I am looping in @joshwlambert as we are working on this together.