Qout netcdf (Issue #20)#26

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snowman2 wants to merge 625 commits intoerdc:masterfrom snowman2:qout_netcdf

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Commits on Jul 14, 2016

added method for generating gssha ihg file. Modified daily qout to work with an array of river ids
snowman2
committed
updated tests to new gshha time series function names
snowman2
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added functionality for a single river node
snowman2
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added ihg tests with modification for node_id
snowman2
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added metadata fore ihg file in function description
snowman2
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Commits on Jul 15, 2016

updated daily qout function to include entire last day if not end of entire time bounds
snowman2
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bug fix ��name NRDPS to NRPDS
snowman2
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Commits on Jul 20, 2016

added optional arg for mpiexec command
snowman2
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Commits on Aug 4, 2016

fixed bug generating list where there is a job to do
snowman2
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Commits on Aug 25, 2016

added 2d lat lon capabolity for voronoi.py
snowman2
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modified code to work with 2D lat/lon grids
snowman2
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Commits on Aug 26, 2016

minor header change
snowman2
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Added generate seasonal averages option
snowman2
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added variable to mitigate read-only variable
snowman2
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moved return period and seasonal average generation to postprocess
snowman2
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bug fix inserting data into file so that it does so for all rivids
snowman2
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minor print message change
snowman2
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Commits on Aug 30, 2016

comment out import
snowman2
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removed printing out current lsm file
snowman2
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added time verification step for lsm files
snowman2
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update spacing
snowman2
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Commits on Sep 23, 2016

added coveralls
snowman2
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updated installation instruction for rtree
snowman2
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updated dowload of miniconda method
snowman2
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modified installation to conda environment
snowman2
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added --yes for creating conda environment
snowman2
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fixed variable python download
snowman2
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added line to restart conda env
snowman2
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updated build config for petsc
snowman2
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added python update for conda
snowman2
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added readthedocs yml files
snowman2
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fixed petsc make check & install to c from gcc
snowman2
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added docs for read the docs
snowman2
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updated import path for conf.py
snowman2
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removed rtree and use mock in rtd install
snowman2
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added docstrings and modified functionality of datetime pattern searching
snowman2
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Commits on Sep 26, 2016

updated README to point to readthedocs
snowman2
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removed unused function
snowman2
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updated doc strings for some gis tools
snowman2
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Commits on Sep 27, 2016

Commits on Sep 28, 2016

added compile instructions for RAPID
snowman2
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fixed documentation bug for running with namelist
snowman2
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Added examples to docstrings and included in postprocessing
snowman2
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removed calibration link
snowman2
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added initial docs for RAPID to GSSHA
snowman2
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added numtodate possibility
snowman2
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fully converted over to num2date function for time
snowman2
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added link to aquaveo tutorial
snowman2
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updated instructions for windows
snowman2
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Commits on Sep 29, 2016

updated GSSHA docs and renamed reach to river for function input
snowman2
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renamed point list to connection list
snowman2
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Commits on Sep 30, 2016

bug fixes checking for dimension and made more robust for NANs
snowman2
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added more tests for weight table and lsm scripts
snowman2
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removed unused files
snowman2
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Added inflow tests for joules and lis
snowman2
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updated TauDEM tools instructions
snowman2
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updated code block syntax
snowman2
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added futures for xrange
snowman2
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added taudem tests
snowman2
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Added test for add length function
snowman2
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updated spacing
snowman2
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bug fix calling cpu_count
snowman2
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changed to past.builtins xrange
snowman2
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Commits on Oct 1, 2016

Update lsm_inflow.rst
Alan D. Snow
authored

Commits on Oct 3, 2016

modified to add osx tests
snowman2
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Merge branch 'master' of https://github.com/erdc-cm/RAPIDpy
snowman2
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modified default language for osx
snowman2
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commented out running osx job
snowman2
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moved language back to python
snowman2
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Commits on Oct 4, 2016

minor doc change
snowman2
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remove unnecessary element
snowman2
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updated docstrings for merge CF compliant code
snowman2
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added postprocessing docs
snowman2
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updated autofunction methods
snowman2
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added manual tests for inflow grids
snowman2
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Spelling fix
lahatte
authored
Spelling fix.
lahatte
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Merge pull request erdc#5 from lahatte/master
Alan D. Snow
authored

Commits on Oct 5, 2016

made tests use unit tests to remove code duplication
snowman2
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Merge branch 'master' of https://github.com/erdc-cm/RAPIDpy
snowman2
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added test for 24 hr erai3 file
snowman2
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Added test for t511 3hr manual
snowman2
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Commits on Oct 6, 2016

bug fix writing ihg file. Not supposed to write seconds
snowman2
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added TautDEM tests & bug fixes
snowman2
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Added TauDEM installation
snowman2
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Moved conda env activate to right before testing
Alan D. Snow
authored

Commits on Oct 7, 2016

modified code to be python3 compatible
snowman2
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Merge branch 'master' of https://github.com/erdc-cm/RAPIDpy
snowman2
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updated wrf-hydro code with fixes and added tests
snowman2
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added gis files used to generate wrf input
snowman2
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added tests for return periods and seasonal averages
snowman2
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various fixes for weight & voronoi
snowman2
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modified url to data
snowman2
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Removed coverage badge because it was not updating.
Alan D. Snow
authored

Commits on Oct 11, 2016

fixed doc bug
snowman2
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incremented version
snowman2
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Added FLDAS
snowman2
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Merge branch 'master' of https://github.com/erdc-cm/RAPIDpy
snowman2
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updated doc string
snowman2
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modified rapid Qout to add sQout for uncertainty in new RAPID version
snowman2
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added muskingum kfac tests
snowman2
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Commits on Oct 12, 2016

changed xrange to past builtins
snowman2
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modified csv reading to use numpy.loadtxt
snowman2
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Commits on Oct 14, 2016

modified to integer for py3 and reverted USGS function read back due to issues with numpy reader
snowman2
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Commits on Oct 18, 2016

modified IHG to read in gssha rapid connect file and added tests
snowman2
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added test for X from drainage line
snowman2
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modified tests to use nose-cov
snowman2
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updated compare path
snowman2
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modified check for sub partition list
snowman2
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Commits on Oct 19, 2016

fix ldas weight example
snowman2
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Commits on Nov 3, 2016

fixed documentation bugs
snowman2
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removed random comment
snowman2
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Commits on Nov 8, 2016

modified RAPIDDataset for time zone output & to use pandas
snowman2
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added pandas to installation
snowman2
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removed duplicate code
snowman2
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Commits on Nov 14, 2016

Update for testing with OSX
Alan D. Snow
authored
Update build for MAC
Alan D. Snow
authored
Update .travis.yml
Alan D. Snow
authored

Commits on Nov 15, 2016

modified to use env vars from RAPID repo
snowman2
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initial commit for appveyor.yml
snowman2
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updated miniconda install cmd
snowman2
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updated cd to correct location for source env var script
snowman2
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spacing and rapid installation tweak
snowman2
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updasted CYG vars
snowman2
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updated conda python env var
snowman2
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updated rapid_specify_varpath.sh to point to INSTALLZ_DIR
snowman2
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modified for updated miniconda install
snowman2
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backslash updated
snowman2
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updated conda packages installation
snowman2
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modify install path to cygpath
snowman2
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Commits on Nov 16, 2016

Added batch mode to rapid prereqs install
Alan D. Snow
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Added gdal & openmpi to cyqwin installation
Alan D. Snow
authored
updated script to not delete namelist
snowman2
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Merge branch 'master' of https://github.com/erdc-cm/RAPIDpy
snowman2
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modified default IS_max_up to 0
snowman2
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added example for reservoir forcing flows
snowman2
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Commits on Nov 18, 2016

updated time range selection with timezone
snowman2
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updated tests to match bug fixes withe namelist and timezone
snowman2
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Commits on Nov 21, 2016

comment out dependencies as their build fails
snowman2
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Merge branch 'master' of https://github.com/erdc-cm/RAPIDpy
snowman2
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update install to use cygwin64
snowman2
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fixed name of gfortran package
snowman2
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modified path names to cygpath
snowman2
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Commits on Nov 22, 2016

fixed example strings
snowman2
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updated installation requirements
snowman2
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added check to see if intersection found for rapid rivid
snowman2
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updated installation to include rapid_specify_varpath.sh
snowman2
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added test for no intersect case of weight table generation
snowman2
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Commits on Nov 25, 2016

modified order of import so shapely is before gdal
snowman2
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Merge branch 'master' of https://github.com/erdc-cm/RAPIDpy
snowman2
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modified to checout master branch of TauDEM
snowman2
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remove semicolon
snowman2
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Commits on Dec 5, 2016

bug fix with tests for reading in file with only one rivid
snowman2
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made file reading more rubust
snowman2
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modified to use numpy functions
snowman2
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Commits on Dec 19, 2016

modified code to more closely follow pep8
Alan D. Snow
committed

Commits on Dec 21, 2016

added option to convert slope in percentage
snowman2
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added ndmin=2 when reading connectivity file for case with only 1 row
snowman2
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bug fix find_goodess_of_fit_csv; pep8 improvements
snowman2
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made read csv more robust
snowman2
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modified seasonal average code to include max/min
snowman2
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made divisiors doubles
snowman2
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added new file to removal
snowman2
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Commits on Jan 10, 2017

bug fix printing goodness of fit to file
snowman2
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bug fix printing goodness of fit to file
snowman2
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bug fix printing goodness of fit to file
snowman2
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Commits on Jan 13, 2017

modified to use anaconda's gcc to compile TauDEM to update GDAL version
snowman2
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Update .travis.yml
Alan D. Snow
authored

Commits on Jan 24, 2017

fix for docs build
Alan D. Snow
committed

Commits on Jan 27, 2017

.travis.yml
Alan D. Snow
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Added cmake to conda install
Alan D. Snow
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updated test weight file to new gis output
Alan D. Snow
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updated path to TauDEM exe files
Alan D. Snow
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removed dowload url
Alan D. Snow
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modified to include readme and license using MANIFEST
Alan D. Snow
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made netcdf4 package lowercase
Alan D. Snow
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incremented version
Alan D. Snow
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Commits on Jan 31, 2017

updated installation instructions
Alan D. Snow
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made netcdf4 lowercase
Alan D. Snow
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updated installation on RAPIDpy to use RAPID repo prereq script
Alan D. Snow
committed

Commits on Mar 6, 2017

handel invalid polygons when computing the weight table
sdc50
committed
Merge pull request erdc#10 from sdc50/bugfix/handel-invalid-polygons
Alan D. Snow
authored
updated biuld to use conda-forge forall packages
Alan D. Snow
committed

Commits on Mar 7, 2017

added tests
sdc50
committed
shapefile needed for new tests
sdc50
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Merge pull request erdc#11 from sdc50/bugfix/handel-invalid-polygons
Alan D. Snow
authored

Commits on Mar 8, 2017

use pytest as nose is deprecated; move docs requirements to setup.py
Alan D. Snow
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updated description to point to RTD
Alan D. Snow
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fix
Alan D. Snow
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updated version in docs
Alan D. Snow
committed

Commits on Mar 9, 2017

Commits on Mar 10, 2017

Update setup.py
Alan D. Snow
authored

Commits on Mar 21, 2017

Updated generate_return_periods.py
spence97
committed

Commits on Mar 22, 2017

Gumble and Log-Pearson methods added
spence97
committed

Commits on Mar 23, 2017

Commits on Mar 24, 2017

fixed typo on generate_return_periods
spence97
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Commits on Mar 31, 2017

added tests
Spencer McDonald
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added tests
Spencer McDonald
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Commits on Apr 19, 2017

Merge pull request erdc#13 from spence97/return_periods
Alan D. Snow
authored
Merge pull request erdc#12 from aat669/docs
Alan D. Snow
authored

Commits on May 15, 2017

added flexibility to runoff vars; added cmip5; modified end date for file
Jim W. Lewis
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Commits on Jun 1, 2017

Added test for CMIP5 data
Jim W. Lewis
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Added documentation and example for CMIP5 data
Jim W. Lewis
committed

Commits on Jun 2, 2017

Merge pull request erdc#15 from jimwlewis/cmip
Alan D. Snow
authored

Commits on Jun 13, 2017

added .idea to ignore
snowman2
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added option to run different return periods
snowman2
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added .idea for pycharm
snowman2
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removed .idea files
snowman2
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merge changes
snowman2
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pep-8 comment fixes
snowman2
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made convert 1 to 3 False by default
snowman2
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Merge pull request erdc#17 from snowman2/master
Alan D. Snow
authored
initial steps towards individual model lsm run
snowman2
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Commits on Jun 14, 2017

fixes for tests
snowman2
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indentation fixes
snowman2
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modified to not have default expected timestep
snowman2
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refactored to allow single folder input/output; removed requirement for dash in folder name
snowman2
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remove pangaea as unused in dependencies
snowman2
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added docstring example for single run
snowman2
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Commits on Jun 15, 2017

Merge pull request erdc#18 from snowman2/lsm_one_input
Alan D. Snow
authored
use pangaea to determine dates where possible; allow qinit
snowman2
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removed taudem install
snowman2
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added test skip if RAPID or TauDEM are not installed
snowman2
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added skips if TauDEM or RAPID are not installed
snowman2
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pinned RAPID version until Qinit NetCDF issue fixed
snowman2
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added tests for output_file_info
snowman2
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Commits on Jun 16, 2017

Merge pull request erdc#19 from snowman2/lsm_one_input
Alan D. Snow
authored

Commits on Jun 30, 2017

added method to select time for qinit
Alan D. Snow
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only use xarray for gen qinit instead of RAPIDDataset
Alan D. Snow
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Merge pull request erdc#22 from snowman2/csv_init
Alan D. Snow
authored
removed requirement for rapid executable location to be valid as it is checked when running
snowman2
committed
fix for issue erdc#14
snowman2
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Merge pull request erdc#24 from snowman2/bugfix/issue14
Alan D. Snow
authored
added cygwin to appveyor build
snowman2
committed

Commits on Jul 1, 2017

Update appveyor.yml
Alan D. Snow
authored
Update appveyor.yml
Alan D. Snow
authored

Commits on Jul 6, 2017

added skip for test to run RAPID if RAPID not installed
snowman2
committed
fix compare dataset name
snowman2
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modified to use netCDF for qinit file
snowman2
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added tests for generating netcdf qout file
snowman2
committed