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Initial commit of code, reference and documentation
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lionel-spinelli committed Feb 7, 2023
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11 changes: 11 additions & 0 deletions Documentation/ShIVAProject/ShiVA_exported_project_structure.html
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<title>Untitled Diagram</title>
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</head>
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47 changes: 47 additions & 0 deletions Documentation/ShinyProxy/application.yml
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proxy:
title: CIML Shiny Server
logo-url: http://www.ciml.univ-mrs.fr/themes/custom/ciml_theme/logo.svg
landing-page: /
heartbeat-rate: 10000
heartbeat-timeout: 60000
port: 8080
authentication: simple
admin-groups: admin
container-log-path: /tmp/container-logs



# ########################################
# Users configuration
# #########################################

# Example: 'simple' authentication configuration

users:
- name: admin
password: 'adminpassword'
groups: admin

- name: shiva
password: 'userpassowrd'
groups: scientists

# ########################################
# Docker configuration
# #########################################
docker:
cert-path: /home/none
url: http://localhost:2375
port-range-start: 20000
specs:
- id: ShIVA_1.1
display-name: Shiva version 1.1
container-cmd: ["R", "-e", "shiny::runApp('/root/Shiva', host='0.0.0.0', port=3838)"]
container-image: cb2m/shiva:1.1
container-volumes: ["/shivaOutput/shiva_seurat4/#{proxy.userId}:/root/Shiva/Output"]

logging:
file:
/etc/shinyproxy/shinyproxy.log
level:
DEBUG
3 changes: 3 additions & 0 deletions src/Reference/Rprofile.site
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local({
options(shiny.port = 3838, shiny.host = "0.0.0.0")
})
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