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automatic update

automatic update #312

Workflow file for this run

name: Lint and Test Galaxy Tools with Planemo
on: [push]
jobs:
lint-and-test:
runs-on: ubuntu-latest
strategy:
max-parallel: 5
steps:
- uses: actions/checkout@v3
- name: Set up Python 3.10
uses: actions/setup-python@v3
with:
python-version: '3.10'
- name: Add conda to system path
run: |
# $CONDA is an environment variable pointing to the root of the miniconda directory
echo $CONDA/bin >> $GITHUB_PATH
- name: Install dependencies
run: |
conda env update --file environment.yml --name base
pip install planemo
- name: Lint with Planemo
run: |
for tool in tools/astropytools/*xml; do
echo "linting $tool"
planemo l $tool
done
- name: Test with Planemo
run: |
for tool in tools/astropytools/*xml; do
echo "testing $tool"
planemo t $tool
done