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Archives tools prototypes #25

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Sep 4, 2023
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da5f87a
archives tool prototypes
francoismg Jul 17, 2023
4d7e6d2
archives tool prototypes
francoismg Jul 21, 2023
f00b5d1
archives tool prototypes
francoismg Aug 2, 2023
75e56da
archives tool prototypes
francoismg Aug 2, 2023
547e292
html preview + tests + help + various fixes
francoismg Aug 10, 2023
781f1fb
removed esap integration from pr + changed section order + changed pa…
francoismg Aug 17, 2023
fc5a34c
Update tools/archives/pyvo_integration/astronomical_archives.xml
volodymyrss Aug 17, 2023
9e2732c
fixed some bugs + added and fixed functionnal tests + added logger + …
francoismg Aug 23, 2023
bbc19ee
linting corrections
francoismg Aug 24, 2023
68aecd8
linting corrections
francoismg Aug 24, 2023
5811128
linting corrections
francoismg Aug 24, 2023
fa620ff
update tests agaist 23.1
bgruening Aug 26, 2023
e1aa434
update test against 23.1
bgruening Aug 26, 2023
01defd7
Update tools/archives/pyvo_integration/astronomical_archives.xml
volodymyrss Aug 26, 2023
5c7ac90
Update tools/archives/pyvo_integration/astronomical_archives.xml
volodymyrss Aug 26, 2023
c49a7af
Update tools/archives/pyvo_integration/astronomical_archives.xml
volodymyrss Aug 26, 2023
4fe613a
Update tools/archives/pyvo_integration/astronomical_archives.xml
volodymyrss Aug 30, 2023
282b9f4
Update tools/archives/pyvo_integration/astronomical_archives.xml
volodymyrss Aug 30, 2023
01dda16
json inputs + run refactor + multiple registries search + various fix…
francoismg Aug 31, 2023
e35fe9c
fixed linting
francoismg Aug 31, 2023
068bf09
better name for output selection
francoismg Sep 4, 2023
326e585
fixed linting
francoismg Sep 4, 2023
842a6c3
fixed linting
francoismg Sep 4, 2023
fb04c95
fixed tests
francoismg Sep 4, 2023
3d746b4
fixed tests
francoismg Sep 4, 2023
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2 changes: 1 addition & 1 deletion .github/workflows/ci.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ on:
types: [run-all-tool-tests-command]
env:
GALAXY_FORK: galaxyproject
GALAXY_BRANCH: release_23.0
GALAXY_BRANCH: release_23.1
MAX_CHUNKS: 40
jobs:
setup:
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2 changes: 1 addition & 1 deletion .github/workflows/pr.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ on:
- '*'
env:
GALAXY_FORK: galaxyproject
GALAXY_BRANCH: release_23.0
GALAXY_BRANCH: release_23.1
MAX_CHUNKS: 4
MAX_FILE_SIZE: 1M
concurrency:
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23 changes: 23 additions & 0 deletions tools/archives/pyvo_integration/.shed.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
name: astronomicalarchivestool
owner: volodymyrss
type: unrestricted
categories:
- Data Source
description: Astronomical archives tools contains tools for querying and fetching resources from astronomical archives into Galaxy
long_description: |
This set of tool uses VO protocols (like TAP) through python libraries like pyvo, in order to enable the
user to interact with astronomical archives which have registered themselves (in the IVOA registry for instance).

They offer the possibility to search and preview those archives content as well as download resources made available
by them.

homepage_url:

remote_repository_url: https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/
auto_tool_repositories:
name_template: "{{ tool_id }}"
description_template: "{{ tool_name }}"
suite:
name: "suite_astronomicalarchivestools"
description: "A suite of Galaxy tools to interact with astronomical archives"
type: repository_suite_definition
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