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BiocManager::install replaced with pak::pkg_install
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lianos committed Sep 17, 2024
1 parent 89d808b commit a411de3
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion facilebio_base/base-packages-install.R
Original file line number Diff line number Diff line change
Expand Up @@ -2,5 +2,6 @@ installed.pkgs <- rownames(installed.packages())
required.pkgs <- readLines("/tmp/base-packages.txt")
install.me <- setdiff(required.pkgs, installed.pkgs)

BiocManager::install(install.me, update = FALSE, ask = FALSE)
# BiocManager::install(install.me, update = FALSE, ask = FALSE)
pak::pkg_install(install.me, upgrade = TRUE, ask = FALSE)

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