Update environment.yml #36
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| name: Run Tests | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| push: | |
| branches: | |
| - main | |
| tags: '*' | |
| concurrency: | |
| # Skip intermediate builds: always. | |
| # Cancel intermediate builds: only if it is a pull request build. | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }} | |
| jobs: | |
| test: | |
| name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: | |
| - '1.9' | |
| python: [3.9] | |
| os: | |
| - ubuntu-latest | |
| arch: | |
| - x64 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 🐍 ${{ matrix.python }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Create environment with micromamba 🐍🖤 | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: '1.3.1-0' | |
| environment-file: ./environment.yml | |
| environment-name: oggm_env # it is recommendable to add both name and yml file. | |
| init-shell: bash | |
| cache-environment: true | |
| # condarc-file: ./condarc.yml # If necessary, we can include .condarc to configure environment | |
| - name: Test creation of environment with micromamba 🔧🐍🖤 | |
| run: | | |
| which python | |
| conda env export | |
| shell: bash -el {0} | |
| - name: Update certifi 🔒🔑 | |
| run: | | |
| pip install --upgrade certifi | |
| shell: bash -el {0} | |
| # - name: Test OGGM installation 🔧🌎 | |
| # run: pytest.oggm | |
| # shell: bash -el {0} | |
| - name: Set ENV Variables for PyCall.jl 🐍 📞 | |
| run: export PYTHON=/home/runner/micromamba/envs/oggm_env/bin/python | |
| shell: bash -el {0} | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: ${{ matrix.version }} | |
| arch: ${{ matrix.arch }} | |
| - name: Check Julia SSL certifications 🔎🔐 | |
| run: julia -e 'using NetworkOptions; println(NetworkOptions.bundled_ca_roots()); println(NetworkOptions.ca_roots())' | |
| shell: bash -el {0} | |
| - uses: julia-actions/cache@v1 | |
| with: | |
| cache-registries: "true" | |
| cache-compiled: "true" | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| env: | |
| PYTHON : /home/runner/micromamba/envs/oggm_env/bin/python | |
| # The SSL certificate path can be readed from the action "Check Julia SSL certifications" | |
| SSL_CERT_FILE: /etc/ssl/certs/ca-certificates.crt | |
| - uses: julia-actions/julia-runtest@v1 | |
| env: | |
| PYTHON : /home/runner/micromamba/envs/oggm_env/bin/python | |
| SSL_CERT_FILE: /etc/ssl/certs/ca-certificates.crt | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| - uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{secrets.CODECOV_TOKEN}} | |
| files: lcov.info |