working Observation components with/without units.

fastenhealth · Mar 3, 2024 · 36c2a2f · 36c2a2f
1 parent 181d8a7
commit 36c2a2f
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Showing 13 changed files with 47 additions and 38 deletions.
diff --git a/backend/pkg/utils/ips/render.go b/backend/pkg/utils/ips/render.go
@@ -55,7 +55,12 @@ func NewNarrative() (*Narrative, error) {
 			}
 			return template.HTML(*s)
 		},
-		"parseList": func(data datatypes.JSON) []map[string]interface{} {
+		"parseStringList": func(data datatypes.JSON) []string {
+			var parsed []string
+			_ = json.Unmarshal(data, &parsed)
+			return parsed
+		},
+		"parseMapList": func(data datatypes.JSON) []map[string]interface{} {
 			var parsed []map[string]interface{}
 			_ = json.Unmarshal(data, &parsed)
 			return parsed

diff --git a/backend/pkg/utils/ips/templates/allergies_intolerances.gohtml b/backend/pkg/utils/ips/templates/allergies_intolerances.gohtml
@@ -26,11 +26,11 @@ Comments: AllergyIntolerance.note[x].text (separated by <br />)
       {{- /*gotype: github.com/fastenhealth/fasten-onprem/backend/pkg/utils/ips.NarrativeTemplateData*/ -}}
       {{range $index, $entry := .AllergyIntolerance }}
       <tr id="{{$entry.SourceResourceID}}">
-         <td>{{pluckList "text" ($entry.Code | parseList) | uniq | join "," }}</td> {{/* Allergen */}}
-         <td>{{pluckList "code" ($entry.ClinicalStatus | parseList) | uniq | join "," }}</td> {{/* Status */}}
-         <td>{{pluckList "code" ($entry.Category | parseList) | uniq | join "," }}</td> {{/* Category */}}
-         <td>{{pluckList "text" ($entry.Manifestation | parseList) | uniq | join "," }}</td> {{/* Reaction */}}
-         <td>{{pluckList "code" ($entry.Criticality | parseList) | uniq | join ","}}</td> {{/* Severity */}}
+         <td>{{pluckList "text" ($entry.Code | parseMapList) | uniq | join "," }}</td> {{/* Allergen */}}
+         <td>{{pluckList "code" ($entry.ClinicalStatus | parseMapList) | uniq | join "," }}</td> {{/* Status */}}
+         <td>{{pluckList "code" ($entry.Category | parseMapList) | uniq | join "," }}</td> {{/* Category */}}
+         <td>{{pluckList "text" ($entry.Manifestation | parseMapList) | uniq | join "," }}</td> {{/* Reaction */}}
+         <td>{{pluckList "code" ($entry.Criticality | parseMapList) | uniq | join ","}}</td> {{/* Severity */}}
          <td th:insert="~{IpsUtilityFragments :: concat (list=*{getNote()},attr='text')}">Comments</td> {{/* Comments - TODO: use FHIRPath */}}
          <td>{{default "unknown" $entry.Onset }}</td> {{/* Onset */}}
       </tr>

diff --git a/backend/pkg/utils/ips/templates/history_of_illness.gohtml b/backend/pkg/utils/ips/templates/history_of_illness.gohtml
@@ -20,8 +20,8 @@ Onset Date: Condition.onsetDateTime || Condition.onsetPeriod.start && “-“ &&
       {{- /*gotype: github.com/fastenhealth/fasten-onprem/backend/pkg/utils/ips.NarrativeTemplateData*/ -}}
       {{range $index, $entry := .Condition }}
          <tr id="{{$entry.SourceResourceID}}">
-            <td>{{pluckList "text" ($entry.Code | parseList) | uniq | join "," }}</td> {{/* Medical Problem */}}
-            <td>{{pluckList "code" ($entry.ClinicalStatus | parseList) | uniq | join "," }}</td> {{/* Status */}}
+            <td>{{pluckList "text" ($entry.Code | parseMapList) | uniq | join "," }}</td> {{/* Medical Problem */}}
+            <td>{{pluckList "code" ($entry.ClinicalStatus | parseMapList) | uniq | join "," }}</td> {{/* Status */}}
             <td th:insert="~{IpsUtilityFragments :: concat (list=*{getNote()},attr='text')}">Comments</td> {{/* Comments - TODO: use FHIRPath */}}
             <td>{{$entry.OnsetDate | date "2006-01-02"}}</td> {{/* Onset */}}
          </tr>

diff --git a/backend/pkg/utils/ips/templates/history_of_procedures.gohtml b/backend/pkg/utils/ips/templates/history_of_procedures.gohtml
@@ -19,7 +19,7 @@ Date: Procedure.performedDateTime || Procedure.performedPeriod.start && “-“
       {{- /*gotype: github.com/fastenhealth/fasten-onprem/backend/pkg/utils/ips.NarrativeTemplateData*/ -}}
       {{range $index, $entry := .Procedure }}
          <tr id="{{$entry.SourceResourceID}}">
-            <td>{{pluckList "text" ($entry.Code | parseList) | uniq | join "," }}</td> {{/* Procedure */}}
+            <td>{{pluckList "text" ($entry.Code | parseMapList) | uniq | join "," }}</td> {{/* Procedure */}}
             <td th:insert="~{IpsUtilityFragments :: concat (list=*{getNote()},attr='text')}">Comments</td> {{/* Comments - TODO: use FHIRPath */}}
             <td>{{$entry.Date | date "2006-01-02"}}</td> {{/* Performed Date */}}
          </tr>

diff --git a/backend/pkg/utils/ips/templates/immunizations.gohtml b/backend/pkg/utils/ips/templates/immunizations.gohtml
@@ -27,10 +27,10 @@ Date: Immunization.occurrenceDateTime || Immunization.occurrenceString
       {{- /*gotype: github.com/fastenhealth/fasten-onprem/backend/pkg/utils/ips.NarrativeTemplateData*/ -}}
       {{range $index, $entry := .Immunization }}
          <tr id="{{$entry.SourceResourceID}}">
-            <td>{{pluckList "text" ($entry.VaccineCode | parseList) | uniq | join "," }}</td> {{/* Immunization */}}
-            <td>{{pluckList "code" ($entry.Status | parseList) | uniq | join "," }}</td> {{/* Status */}}
+            <td>{{pluckList "text" ($entry.VaccineCode | parseMapList) | uniq | join "," }}</td> {{/* Immunization */}}
+            <td>{{pluckList "code" ($entry.Status | parseMapList) | uniq | join "," }}</td> {{/* Status */}}
             <td th:insert="~{IpsUtilityFragments :: concatDoseNumber (list=*{getProtocolApplied()})}">Dose Number</td> {{/* Comments - TODO: use FHIRPath */}}
-            <td>{{pluckList "display" ($entry.Manufacturer | parseList) | uniq | join "," }}</td> {{/* Manufacturer */}}
+            <td>{{pluckList "display" ($entry.Manufacturer | parseMapList) | uniq | join "," }}</td> {{/* Manufacturer */}}
             <td>{{$entry.LotNumber}}</td> {{/* Lot Number */}}
             <td th:insert="~{IpsUtilityFragments :: concat (list=*{getNote()},attr='text')}">Comments</td>
             <td>{{$entry.Date | date "2006-01-02"}}</td> {{/* Performed Date */}}

diff --git a/backend/pkg/utils/ips/templates/includes/observation-unit.gohtml b/backend/pkg/utils/ips/templates/includes/observation-unit.gohtml
@@ -1,11 +1,11 @@
-{{if not (empty .ValueString) }}
+{{if not (empty (.ValueString  | parseMapList)) }}
     {{.ValueString}}
-{{else if not (empty (.ValueQuantity | parseList)) }}
-    {{.ValueQuantity | parseList | pluckList "unit" | join "," }}
+{{else if not (empty (.ValueQuantity | parseMapList)) }}
+    {{.ValueQuantity | parseMapList | pluckList "unit" | join "," }}
 {{else if not (empty .ValueDate) }}
     {{.ValueDate | date "2006-01-02" }}
-{{else if not (empty (.ValueConcept | parseList)) }}
+{{else if not (empty (.ValueConcept | parseMapList)) }}
     {{.ValueConcept}}
-{{else if not (empty (.ComponentValueQuantity | parseList)) }}
-    {{.ComponentValueQuantity | parseList | pluckList "unit" | join "," }}
+{{else if not (empty (.ComponentValueQuantity | parseMapList)) }}
+    {{.ComponentValueQuantity | parseMapList | pluckList "unit" | join "," }}
 {{end}}
diff --git a/backend/pkg/utils/ips/templates/includes/observation-value.gohtml b/backend/pkg/utils/ips/templates/includes/observation-value.gohtml
@@ -1,23 +1,27 @@
-{{if not (empty .entry.ValueString) }}
-    {{.ValueString}}
-{{else if not (empty (.entry.ValueQuantity | parseList)) }}
-    {{.entry.ValueQuantity | parseList | pluckList "value" | roundList 2 | join "," }}
+{{if not (empty (.entry.ValueString | parseMapList)) }}
+    {{.entry.ValueString | parseStringList | join ","}}
+{{else if not (empty (.entry.ValueQuantity | parseMapList)) }}
+    {{.entry.ValueQuantity | parseMapList | pluckList "value" | roundList 2 | join "," }}
     {{if (get . "include_unit")}}
-        {{.entry.ValueQuantity | parseList | pluckList "unit" | join "," }}
+        {{.entry.ValueQuantity | parseMapList | pluckList "unit" | join "," }}
     {{end}}
 {{else if not (empty .entry.ValueDate) }}
     {{.entry.ValueDate | date "2006-01-02" }}
-{{else if not (empty (.entry.ValueConcept | parseList)) }}
+{{else if not (empty (.entry.ValueConcept | parseMapList)) }}
     {{.entry.ValueConcept}}
-{{else if not (empty (.entry.ComponentValueQuantity | parseList)) }}
-    {{$componentCodeText := $.entry.ComponentCode | parseList | pluckList "text" }}
-    {{$componentValueQuantity := $.entry.ComponentValueQuantity | parseList | pluckList "value" | roundList 2 }}
+{{else if not (empty (.entry.ComponentValueQuantity | parseMapList)) }}
+    {{$componentCodeText := .entry.ComponentCode | parseMapList | pluckList "text" }}
+    {{$componentValueQuantity := .entry.ComponentValueQuantity | parseMapList | pluckList "value" | roundList 2 }}
+    {{$componentValueQuantityUnit := .entry.ComponentValueQuantity | parseMapList | pluckList "unit" }}
+
 
     {{range $index, $text := $componentCodeText }}
         {{$text}} - {{index $componentValueQuantity $index}}
+        {{if (get $ "include_unit")}}
+            {{index $componentValueQuantityUnit $index}}
+        {{end}}
+        <br/>
     {{end}}
 
-    {{if (get . "include_unit")}}
-    {{.ComponentValueQuantity | parseList | pluckList "unit" | join "," }}
-    {{end}}
+
 {{end}}
diff --git a/backend/pkg/utils/ips/templates/medical_devices.gohtml b/backend/pkg/utils/ips/templates/medical_devices.gohtml
@@ -20,8 +20,8 @@ Date Recorded: DeviceUseStatement.recordedDateTime
       {{- /*gotype: github.com/fastenhealth/fasten-onprem/backend/pkg/utils/ips.NarrativeTemplateData*/ -}}
       {{range $index, $entry := .Device }}
          <tr id="{{$entry.SourceResourceID}}">
-            <td>{{pluckList "text" ($entry.Type | parseList) | uniq | join "," }}</td> {{/* Device */}}
-            <td>{{pluckList "code" ($entry.Status | parseList) | uniq | join "," }}</td> {{/* Status */}}
+            <td>{{pluckList "text" ($entry.Type | parseMapList) | uniq | join "," }}</td> {{/* Device */}}
+            <td>{{pluckList "code" ($entry.Status | parseMapList) | uniq | join "," }}</td> {{/* Status */}}
             <td th:insert="~{IpsUtilityFragments :: concat (list=*{getNote()},attr='text')}">Comments</td>
             <td></td> {{/* Date Recorded */}}
          </tr>

diff --git a/backend/pkg/utils/ips/templates/plan_of_care.gohtml b/backend/pkg/utils/ips/templates/plan_of_care.gohtml
@@ -23,7 +23,7 @@ Planned End: CarePlan.period.end
       {{range $index, $entry := .CarePlan }}
          <tr id="{{$entry.SourceResourceID}}">
             <td th:text="*{getDescription()}">Activity</td>
-            <td>{{pluckList "code" ($entry.Intent | parseList) | uniq | join "," }}</td> {{/* Intent */}}
+            <td>{{pluckList "code" ($entry.Intent | parseMapList) | uniq | join "," }}</td> {{/* Intent */}}
             <td th:insert="~{IpsUtilityFragments :: concat (list=*{getNote()},attr='text')}">Comments</td>
             <td>{{$entry.Date}}</td>{{/* Planned Start */}}
             <td th:text="*{getPeriod().getEndElement().getValue()}">Planned End</td>

diff --git a/backend/pkg/utils/ips/templates/pregnancy.gohtml b/backend/pkg/utils/ips/templates/pregnancy.gohtml
@@ -20,7 +20,7 @@ Date: Observation.effectiveDateTime || Observation.effectivePeriod.start
       {{- /*gotype: github.com/fastenhealth/fasten-onprem/backend/pkg/utils/ips.NarrativeTemplateData*/ -}}
       {{range $index, $entry := .Observation }}
          <tr id="{{$entry.SourceResourceID}}">
-            <td>{{pluckList "text" ($entry.Code | parseList) | uniq | join "," }}</td> {{/* Code */}}
+            <td>{{pluckList "text" ($entry.Code | parseMapList) | uniq | join "," }}</td> {{/* Code */}}
             <td>{{template "observation-value.gohtml" (dict "entry" $entry "include_unit" true)}}</td> {{/* Result */}}
             <td th:insert="~{IpsUtilityFragments :: concat (list=*{getNote()},attr='text')}">Comments</td>
             <td>{{$entry.Date | date "2006-01-02"}}</td> {{/* Date */}}

diff --git a/backend/pkg/utils/ips/templates/problem_list.gohtml b/backend/pkg/utils/ips/templates/problem_list.gohtml
@@ -20,8 +20,8 @@ Onset Date: Condition.onsetDateTime || Condition.onsetPeriod.start && “-“ &&
       {{- /*gotype: github.com/fastenhealth/fasten-onprem/backend/pkg/utils/ips.NarrativeTemplateData*/ -}}
       {{range $index, $entry := .Condition }}
          <tr id="{{$entry.SourceResourceID}}">
-            <td>{{pluckList "text" ($entry.Code | parseList) | uniq | join "," }}</td> {{/* Medical Problems */}}
-            <td>{{pluckList "code" ($entry.ClinicalStatus | parseList) | uniq | join "," }}</td> {{/* Status */}}
+            <td>{{pluckList "text" ($entry.Code | parseMapList) | uniq | join "," }}</td> {{/* Medical Problems */}}
+            <td>{{pluckList "code" ($entry.ClinicalStatus | parseMapList) | uniq | join "," }}</td> {{/* Status */}}
             <td th:insert="~{IpsUtilityFragments :: concat (list=*{getNote()},attr='text')}">Comments</td>
             <td>{{$entry.OnsetDate | date "2006-01-02"}}</td> {{/* Onset */}}
          </tr>

diff --git a/backend/pkg/utils/ips/templates/social_history.gohtml b/backend/pkg/utils/ips/templates/social_history.gohtml
@@ -22,7 +22,7 @@ Date: Observation.effectiveDateTime || Observation.effectivePeriod.start
       {{- /*gotype: github.com/fastenhealth/fasten-onprem/backend/pkg/utils/ips.NarrativeTemplateData*/ -}}
       {{range $index, $entry := .Observation }}
          <tr id="{{$entry.SourceResourceID}}">
-            <td>{{pluckList "text" ($entry.Code | parseList) | uniq | join "," }}</td> {{/* Code */}}
+            <td>{{pluckList "text" ($entry.Code | parseMapList) | uniq | join "," }}</td> {{/* Code */}}
             <td>{{template "observation-value.gohtml" (dict "entry" $entry "include_unit" false)}}</td> {{/* Result */}}
             <td th:insert="~{IpsUtilityFragments :: renderValueUnit (value=*{getValue()})}">Unit</td>
             <td th:insert="~{IpsUtilityFragments :: concat (list=*{getNote()},attr='text')}">Comments</td>

diff --git a/backend/pkg/utils/ips/templates/vital_signs.gohtml b/backend/pkg/utils/ips/templates/vital_signs.gohtml
@@ -25,7 +25,7 @@ Date: Observation.effectiveDateTime || Observation.effectivePeriod.start
       {{- /*gotype: github.com/fastenhealth/fasten-onprem/backend/pkg/utils/ips.NarrativeTemplateData*/ -}}
       {{range $index, $entry := .Observation }}
          <tr id="{{$entry.SourceResourceID}}">
-            <td>{{pluckList "text" ($entry.Code | parseList) | uniq | join "," }}</td> {{/* Code */}}
+            <td>{{pluckList "text" ($entry.Code | parseMapList) | uniq | join "," }}</td> {{/* Code */}}
             <td>{{template "observation-value.gohtml" (dict "entry" $entry "include_unit" false)}}</td> {{/* Result */}}
             <td>{{template "observation-unit.gohtml" $entry}}</td>
             <td th:replace="~{IpsUtilityFragments :: firstFromCodeableConceptList (list=*{getInterpretation()})}">Interpretation</td>