try 0.6.12

.github/workflows/ci.yml

@@ -24,30 +24,24 @@ jobs:
     - name: Install Python ${{ matrix.python-version }}
       run: uv python install ${{ matrix.python-version }}
 
-    - name: Setup, Lint, and Test Python (Linux/macOS)
-      if: runner.os != 'Windows'
+    - name: Pinned Ruff
+      run:  uvx [email protected] check
+    - name: Lastest Ruff (just to check for warnings)
+      run: uvx ruff@latest check || echo "Ignoring warnings from the latest version of ruff"
+    - name: Install dependencies
+      run:  uv sync --all-extras --prerelease allow
+    - name: Run test
+      shell: bash
       run: |
-        uvx [email protected] check
-        uvx ruff@latest check || echo "Ignoring warnings from the latest version of ruff"
-        uv sync --all-extras --prerelease allow
-        source .venv/bin/activate
-        cd tests
-        python test.py
-        cd ..
-        uv build
-
-    - name: Setup, Lint, and Test Python (Windows)
-      if: runner.os == 'Windows'
-      run: |
-        uvx [email protected] check
-        uvx ruff@latest check || echo "Ignoring warnings from the latest version of ruff"
-        uv sync --all-extras --prerelease allow
-        .venv\Scripts\activate
-        cd tests
-        python test.py
-        cd ..
-        uv build
+        if [[ "$RUNNER_OS" != "Windows" ]]; then
+          source .venv/bin/activate
+        else
+          source .venv/Scripts/activate
+        fi
+        python tests/test.py
 
+    - name: Build
+      run: uv build        
     - name: Save SDist
       if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.13'
       uses: actions/upload-artifact@v4

pyproject.toml

@@ -1,16 +1,16 @@
 [build-system]
 requires = [
-    "numpy>=1.17.0",
-    "setuptools",
-    "cython",
-    "wheel",
-    "scipy",
-] # cmk add versions
+    "numpy>=1.22.0",
+    "setuptools>=42.0.0",
+    "cython>=0.29.0",
+    "wheel>=0.34.0",
+    "scipy>=1.5.0",
+]
 build-backend = "setuptools.build_meta"
 
 [project]
 name = "fastlmm"
-version = "0.6.12-alpha.1"
+version = "0.6.12"
 description = "Fast GWAS"
 readme = "README.md"
 requires-python = ">=3.10"
@@ -41,8 +41,8 @@ dependencies = [
     "cloudpickle>=3.1.0",
     "statsmodels>=0.14.2",
     "psutil>=6.1.0",
-    "pysnptools>=0.5.14a1", #cmk
-    "fastlmmclib>=0.0.7a1", #cmk
+    "pysnptools>=0.5.14",
+    "fastlmmclib>=0.0.7",
 ]
 [project.urls]
 homepage = "https://fastlmm.github.io/"

useful.md

@@ -4,6 +4,31 @@
 uv sync --extra dev --prerelease allow
 ```
 
+```bash
+cd doc
+make.bat html
+build\html\index.html
+xcopy /c /e /s /h build\html ..\docs
+cd ..
+```
+
+* Download and extract wheel artifacts from GitHub.
+
+```bash
+cd /d "C:\Users\carlk\Downloads\wheels (46)"
+twine upload fastlmm*
+```
+
+Create a local distribution"
+
+```bash
+uv build
+twine upload dist/fastlmm-0.????.tar.gz
+
+```
+
+## Old
+
 ```bash
 python setup.py sdist
 twine upload dist/*.tar.gz