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| # This file was originally generated by maturin v0.14.17 | ||
| name: CI3 | ||
| on: | ||
| push: | ||
| schedule: | ||
| - cron: '0 0 1 * *' | ||
| pull_request: | ||
| workflow_dispatch: | ||
| env: | ||
| CARGO_TERM_COLOR: always | ||
| permissions: | ||
| contents: read | ||
| jobs: | ||
| test_rust: | ||
| name: Test Rust | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| os: [ubuntu-latest] # cmk, windows-latest, macos-13, macos-14] | ||
| runs-on: ${{ matrix.os }} | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v3 | ||
| - name: Set up Rust | ||
| uses: actions-rs/toolchain@v1 | ||
| with: | ||
| toolchain: stable | ||
| override: true | ||
| - name: Test Rust no-default-features | ||
| run: cargo test --verbose --no-default-features | ||
| - name: Test Rust default features | ||
| run: cargo test --verbose | ||
| macos: | ||
| runs-on: macos-13 | ||
| strategy: | ||
| matrix: | ||
| target: [x86_64, aarch64] | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: | | ||
| 3.9 | ||
| 3.10 | ||
| 3.11 | ||
| 3.12 | ||
| - name: Build wheels | ||
| uses: PyO3/maturin-action@v1 | ||
| with: | ||
| target: ${{ matrix.target }} | ||
| args: --release --out dist --find-interpreter | ||
| - name: Upload wheels | ||
| uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: wheels | ||
| path: dist | ||
| linux: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| target: [x86_64, aarch64] | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: | | ||
| 3.9 | ||
| 3.10 | ||
| 3.11 | ||
| 3.12 | ||
| - name: Install cross-compilation dependencies | ||
| if: matrix.target == 'aarch64' | ||
| run: | | ||
| sudo apt-get update | ||
| sudo apt-get install -y gcc-aarch64-linux-gnu | ||
| - name: Build wheels for aarch64 | ||
| if: matrix.target == 'aarch64' | ||
| env: | ||
| CC: aarch64-linux-gnu-gcc | ||
| CFLAGS: -march=armv8-a -D__ARM_ARCH=8 | ||
| uses: PyO3/maturin-action@v1 | ||
| with: | ||
| target: ${{ matrix.target }} | ||
| args: --release --out dist -i python3.9 -i python3.10 -i python3.11 -i python3.12 | ||
| manylinux: auto | ||
| - name: Build wheels for x86_64 | ||
| if: matrix.target == 'x86_64' | ||
| uses: PyO3/maturin-action@v1 | ||
| with: | ||
| target: ${{ matrix.target }} | ||
| args: --release --out dist -i python3.9 -i python3.10 -i python3.11 -i python3.12 | ||
| manylinux: auto | ||
| - name: Upload wheels | ||
| uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: wheels | ||
| path: dist | ||
| windows: | ||
| runs-on: windows-latest | ||
| strategy: | ||
| matrix: | ||
| target: [x64] | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: | | ||
| 3.9 | ||
| 3.10 | ||
| 3.11 | ||
| 3.12 | ||
| architecture: ${{ matrix.target }} | ||
| - name: Build wheels | ||
| uses: PyO3/maturin-action@v1 | ||
| with: | ||
| target: ${{ matrix.target }} | ||
| args: --release --out dist --find-interpreter | ||
| - name: Upload wheels | ||
| uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: wheels | ||
| path: dist | ||
| sdist: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - name: Build sdist | ||
| uses: PyO3/maturin-action@v1 | ||
| with: | ||
| command: sdist | ||
| args: --out dist | ||
| - name: Upload sdist | ||
| uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: wheels | ||
| path: dist | ||
| test: | ||
| name: Test | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| python-version: ["3.13] #cmk, "3.10", "3.11", "3.12", "3.13"] | ||
| os: [ubuntu-latest] #cmk, windows-latest, macos-13, macos-14] | ||
| runs-on: ${{ matrix.os }} | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v3 | ||
| - name: Install the latest version of uv | ||
| uses: astral-sh/setup-uv@v3 | ||
| - name: Install Python ${{ matrix.python-version }} | ||
| run: uv python install ${{ matrix.python-version }} | ||
| - name: Setup, Lint, and Test Python | ||
| run: | | ||
| cd bed_reader | ||
| ls -R | ||
| uvx [email protected] check . | ||
| uvx ruff@latest check . || echo "Ignoring warnings from the latest version of ruff" | ||
| uv sync --extra min_dev | ||
| uvx pytest bed_reader/tests/test_opt_dep.py | ||
| uv sync --extra dev --extra sparse --extra samples | ||
| uvx pytest bed_reader | ||
