Fix CI workflow to activate virtual environment conditionally based o…

…n OS
fastlmm · Oct 17, 2024 · 24274fe · 24274fe
1 parent 1c26860
commit 24274fe
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -179,13 +179,14 @@ jobs:
     - name: Install Python ${{ matrix.python-version }}
       run: uv python install ${{ matrix.python-version }}
     - name: Setup, Lint, and Test Python
+      shell: bash
       run: |
         cd bed_reader
         uvx [email protected] check .
         uvx ruff@latest check . || echo "Ignoring warnings from the latest version of ruff"
         uv sync --extra min_dev
-        source ../.venv/bin/activate
+        [ "$RUNNER_OS" = "Windows" ] && call .\\..\\.venv\\Scripts\\activate || source ../.venv/bin/activate
         pytest tests/test_opt_dep.py
         uv sync --extra dev --extra sparse --extra samples
-        source ../.venv/bin/activate
+        [ "$RUNNER_OS" = "Windows" ] && call .\\..\\.venv\\Scripts\\activate || source ../.venv/bin/activate
         pytest .