The goal of DivComAnalyses is to facilitate community analysis (e.g., 16S community metabarcoding, metaphlan taxonomic profiling from metagenomes). In data filtering (i.e., potential contaminants identified using decontam R package), in normalizing data (i.e., 16S qPCR normalization), generate phylogenetic and taxonomic alpha and beta-diversity metrics, visualize community composition and structure using unconstrained and constrained ordination, facilitate statistical analysis based on DEseq2, ALDex2, vegan R packages.
You can find the latest version of the tutorial here.
You can’t install the package from GitHub yet.
You will need to source the R files where the functions are defined -
see Tutorial.
## install.packages("devtools")
#devtools::install_github("fconstancias/DivComAnalyses")