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DivComAnalyses

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DOI

The goal of DivComAnalyses is to facilitate community analysis (e.g., 16S community metabarcoding, metaphlan taxonomic profiling from metagenomes). In data filtering (i.e., potential contaminants identified using decontam R package), in normalizing data (i.e., 16S qPCR normalization), generate phylogenetic and taxonomic alpha and beta-diversity metrics, visualize community composition and structure using unconstrained and constrained ordination, facilitate statistical analysis based on DEseq2, ALDex2, vegan R packages.

Tutorial

You can find the latest version of the tutorial here.

Installation

You can’t install the package from GitHub yet. You will need to source the R files where the functions are defined - see Tutorial.

## install.packages("devtools")
#devtools::install_github("fconstancias/DivComAnalyses")

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Community Analysis and visualisation using R

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