R-CMD-check #216
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1 error and 24 warnings
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Set up R and install BiocManager
No such keg: /opt/homebrew/Cellar/[email protected]
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Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/
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Set up R and install BiocManager
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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Set up R and install BiocManager
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Set up R and install BiocManager
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Set up R and install BiocManager
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Set up R and install BiocManager
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Run BiocCheck
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Run BiocCheck
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Run BiocCheck
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Run BiocCheck
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install system dependencies (macOS)
harfbuzz 10.1.0 is already installed and up-to-date.
To reinstall 10.1.0, run:
brew reinstall harfbuzz
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Install system dependencies (macOS)
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
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Install remotes
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies
Unused dummy argument ‘itry’ at (1) [-Wunused-dummy-argument]
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Install dependencies
Unused variable ‘t4’ declared at (1) [-Wunused-variable]
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Install dependencies
Unused variable ‘t5’ declared at (1) [-Wunused-variable]
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Install dependencies
‘t2’ may be used uninitialized [-Wmaybe-uninitialized]
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Install dependencies
‘i2’ may be used uninitialized [-Wmaybe-uninitialized]
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Install dependencies
Unused dummy argument ‘a’ at (1) [-Wunused-dummy-argument]
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Install dependencies
Unused variable ‘i’ declared at (1) [-Wunused-variable]
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Install dependencies
Unused dummy argument ‘idigit’ at (1) [-Wunused-dummy-argument]
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Test coverage
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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