Restricted Cofunction RHS #354
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Test PyOP2 and TSFC | |
on: | |
push: | |
branches: | |
- master | |
pull_request: | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
strategy: | |
# Don't immediately kill all if one Python version fails | |
fail-fast: false | |
matrix: | |
python-version: ['3.10', '3.11', '3.12', '3.13'] | |
env: | |
CC: mpicc | |
PETSC_DIR: ${{ github.workspace }}/petsc | |
PETSC_ARCH: default | |
RDMAV_FORK_SAFE: 1 | |
PYOP2_CI_TESTS: 1 | |
timeout-minutes: 60 | |
steps: | |
- name: Install system dependencies | |
shell: bash | |
run: | | |
sudo apt update | |
sudo apt install build-essential libopenmpi-dev \ | |
libblas-dev liblapack-dev gfortran libhwloc-dev libfabric-dev | |
- name: Set correct Python version | |
uses: actions/setup-python@v5 | |
id: setup-python | |
with: | |
python-version: ${{ matrix.python-version }} | |
# By default setup-python pollutes the environment in such a way that virtual | |
# environments cannot be used. This prevents us from building libsupermesh because | |
# it relies on having rtree installed into a venv. | |
# https://github.com/actions/setup-python/issues/851 | |
# https://github.com/actions/setup-python/blob/main/docs/advanced-usage.md#using-update-environment-flag | |
update-environment: false | |
- name: Create virtual environment | |
shell: bash | |
run: | | |
${{ steps.setup-python.outputs.python-path }} -m venv venv | |
- name: Clone PETSc | |
uses: actions/checkout@v4 | |
with: | |
repository: firedrakeproject/petsc | |
path: ${{ env.PETSC_DIR }} | |
- name: Build and install PETSc | |
shell: bash | |
working-directory: ${{ env.PETSC_DIR }} | |
run: | | |
./configure \ | |
--download-hdf5 \ | |
--with-debugging=1 \ | |
--with-shared-libraries=1 \ | |
--with-c2html=0 \ | |
--with-fortran-bindings=0 | |
make | |
- name: Install libsupermesh | |
shell: bash | |
run: | | |
source venv/bin/activate | |
python -m pip install 'rtree>=1.2' | |
git clone https://github.com/firedrakeproject/libsupermesh.git | |
mkdir -p libsupermesh/build | |
cd libsupermesh/build | |
cmake .. \ | |
-DBUILD_SHARED_LIBS=ON \ | |
-DCMAKE_INSTALL_PREFIX="$VIRTUAL_ENV" \ | |
-DMPI_C_COMPILER=mpicc \ | |
-DMPI_CXX_COMPILER=mpicxx \ | |
-DMPI_Fortran_COMPILER=mpif90 \ | |
-DCMAKE_Fortran_COMPILER=mpif90 \ | |
-DMPIEXEC_EXECUTABLE=mpiexec | |
make | |
make install | |
- name: Checkout Firedrake | |
uses: actions/checkout@v4 | |
with: | |
path: firedrake | |
- name: Install PyOP2 dependencies | |
shell: bash | |
working-directory: firedrake | |
run: | | |
source ../venv/bin/activate | |
python -m pip install -U pip | |
python -m pip install -U pytest-timeout | |
- name: Install PyOP2 | |
shell: bash | |
working-directory: firedrake | |
run: | | |
source ../venv/bin/activate | |
export CC=mpicc | |
export HDF5_DIR="$PETSC_DIR/$PETSC_ARCH" | |
export HDF5_MPI=ON | |
python -m pip install --no-binary h5py -v ".[test]" | |
- name: Run TSFC tests | |
shell: bash | |
working-directory: firedrake | |
run: | | |
source ../venv/bin/activate | |
pytest --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v tests/tsfc | |
timeout-minutes: 10 | |
- name: Run PyOP2 tests | |
shell: bash | |
working-directory: firedrake | |
run: | | |
source ../venv/bin/activate | |
pytest -m "not parallel" --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v tests/pyop2 | |
mpiexec -n 2 --oversubscribe pytest -m "parallel[2]" --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v tests/pyop2 | |
mpiexec -n 3 --oversubscribe pytest -m "parallel[3]" --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v tests/pyop2 | |
timeout-minutes: 10 |