AllAtOnceReducedFunctional
- initial time-parallel implementation
#6910
8141 tests run, 6663 passed, 1474 skipped, 4 failed.
Annotations
Check failure on line 37 in tests/firedrake/regression/test_4dvar_reduced_functional.py
github-actions / Firedrake complex
test_4dvar_reduced_functional.test_advection[nprocs=1]
ufl.algorithms.check_arities.ArityMismatch: Adding expressions with non-matching form arguments conj((Argument(WithGeometry(FunctionSpace(<firedrake.mesh.MeshTopology object at 0x7fe65c131730>, FiniteElement('Discontinuous Lagrange', interval, 0), name=None), Mesh(VectorElement(FiniteElement('Discontinuous Lagrange', interval, 1, variant='equispaced'), dim=1, variant='equispaced'), 6)), 0, None), True)) vs conj((Argument(WithGeometry(FunctionSpace(<firedrake.mesh.MeshTopology object at 0x7fe65c131730>, FiniteElement('Discontinuous Lagrange', interval, 0), name=None), Mesh(VectorElement(FiniteElement('Discontinuous Lagrange', interval, 1, variant='equispaced'), dim=1, variant='equispaced'), 6)), 0, None), False)).
Raw output
@pytest.mark.parallel(nprocs=[1, 2, 3, 4])
def test_advection():
> main_test_advection()
tests/firedrake/regression/test_4dvar_reduced_functional.py:281:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
tests/firedrake/regression/test_4dvar_reduced_functional.py:300: in main_test_advection
Jhat_pyadj = fdvar_pyadjoint(V)
tests/firedrake/regression/test_4dvar_reduced_functional.py:164: in fdvar_pyadjoint
qn, qn1, stepper = timestepper(V)
tests/firedrake/regression/test_4dvar_reduced_functional.py:37: in timestepper
stepper = fd.LinearVariationalSolver(
petsc4py/PETSc/Log.pyx:188: in petsc4py.PETSc.Log.EventDecorator.decorator.wrapped_func
???
petsc4py/PETSc/Log.pyx:189: in petsc4py.PETSc.Log.EventDecorator.decorator.wrapped_func
???
/usr/lib/python3.12/contextlib.py:81: in inner
return func(*args, **kwds)
firedrake/adjoint_utils/variational_solver.py:44: in wrapper
init(self, problem, *args, **kwargs)
firedrake/variational_solver.py:243: in __init__
ctx.set_jacobian(self.snes)
firedrake/solving_utils.py:288: in set_jacobian
snes.setJacobian(self.form_jacobian, J=self._jac.petscmat,
/usr/lib/python3.12/functools.py:995: in __get__
val = self.func(instance)
firedrake/solving_utils.py:493: in _jac
return self._assembler_jac.allocate()
firedrake/assemble.py:1316: in allocate
self._make_maps_and_regions())
firedrake/assemble.py:1345: in _make_maps_and_regions
elif any(local_kernel.indices == (None, None) for assembler in self._all_assemblers for local_kernel, _ in assembler.local_kernels):
firedrake/assemble.py:1345: in <genexpr>
elif any(local_kernel.indices == (None, None) for assembler in self._all_assemblers for local_kernel, _ in assembler.local_kernels):
/usr/lib/python3.12/functools.py:995: in __get__
val = self.func(instance)
firedrake/assemble.py:1054: in local_kernels
kernels = tsfc_interface.compile_form(
petsc4py/PETSc/Log.pyx:188: in petsc4py.PETSc.Log.EventDecorator.decorator.wrapped_func
???
petsc4py/PETSc/Log.pyx:189: in petsc4py.PETSc.Log.EventDecorator.decorator.wrapped_func
???
pyop2/caching.py:550: in wrapper
value = func(*args, **kwargs)
petsc4py/PETSc/Log.pyx:188: in petsc4py.PETSc.Log.EventDecorator.decorator.wrapped_func
???
petsc4py/PETSc/Log.pyx:189: in petsc4py.PETSc.Log.EventDecorator.decorator.wrapped_func
???
pyop2/caching.py:550: in wrapper
value = func(*args, **kwargs)
petsc4py/PETSc/Log.pyx:188: in petsc4py.PETSc.Log.EventDecorator.decorator.wrapped_func
???
petsc4py/PETSc/Log.pyx:189: in petsc4py.PETSc.Log.EventDecorator.decorator.wrapped_func
???
firedrake/tsfc_interface.py:220: in compile_form
tsfc_kernel = TSFCKernel(
firedrake/tsfc_interface.py:95: in __init__
tree = tsfc_compile_form(form, prefix=name, parameters=parameters,
petsc4py/PETSc/Log.pyx:188: in petsc4py.PETSc.Log.EventDecorator.decorator.wrapped_func
???
petsc4py/PETSc/Log.pyx:189: in petsc4py.PETSc.Log.EventDecorator.decorator.wrapped_func
???
pyop2/caching.py:550: in wrapper
value = func(*args, **kwargs)
petsc4py/PETSc/Log.pyx:188: in petsc4py.PETSc.Log.EventDecorator.decorator.wrapped_func
???
petsc4py/PETSc/Log.pyx:189: in petsc4py.PETSc.Log.EventDecorator.decorator.wrapped_func
???
pyop2/caching.py:550: in wrapper
value = func(*args, **kwargs)
tsfc/driver.py:68: in compile_form
fd = ufl_utils.compute_form_data(form, complex_mode=complex_mode)
tsfc/ufl_utils.py:56: in compute_form_data
fd = ufl_compute_form_data(
../firedrake_venv/src/ufl/ufl/algorithms/compute_form_data.py:427: in compute_form_data
check_form_arity(preprocessed_form, self.original_form.arguments(), complex_mode)
../firedrake_venv/src/ufl/ufl/algorithms/check_arities.py:213: in check_form_arity
check_integrand_arity(itg.integrand(), arguments, complex_mode)
../firedrake_venv/src/ufl/ufl/algorithms/check_arities.py:194: in check_integrand_arity
arg_tuples = map_expr_dag(rules, expr, compress=False)
../firedrake_venv/src/ufl/ufl/corealg/map_dag.py:35: in map_expr_dag
(result,) = map_expr_dags(
../firedrake_venv/src/ufl/ufl/corealg/map_dag.py:103: in map_expr_dags
r = handlers[v._ufl_typecode_](v, *[vcache[u] for u in v.ufl_operands])
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <ufl.algorithms.check_arities.ArityChecker object at 0x7fe65a1f05f0>
o = Sum(Product(Conj(ReferenceValue(Argument(WithGeometry(FunctionSpace(<firedrake.mesh.MeshTopology object at 0x7fe65c131...Index((Index(0), Index(0)))), MultiIndex((Index(0),)))), Constant([0.14701875+0.j], name='constant_8651', count=8651)))
a = ((Argument(WithGeometry(FunctionSpace(<firedrake.mesh.MeshTopology object at 0x7fe65c131730>, FiniteElement('Discontin...ment('Discontinuous Lagrange', interval, 1, variant='equispaced'), dim=1, variant='equispaced'), 6)), 1, None), False))
b = ((Argument(WithGeometry(FunctionSpace(<firedrake.mesh.MeshTopology object at 0x7fe65c131730>, FiniteElement('Discontin...ment('Discontinuous Lagrange', interval, 1, variant='equispaced'), dim=1, variant='equispaced'), 6)), 1, None), False))
def sum(self, o, a, b):
"""Apply to sum."""
if a != b:
> raise ArityMismatch(
f"Adding expressions with non-matching form arguments {_afmt(a)} vs {_afmt(b)}."
)
E ufl.algorithms.check_arities.ArityMismatch: Adding expressions with non-matching form arguments conj((Argument(WithGeometry(FunctionSpace(<firedrake.mesh.MeshTopology object at 0x7fe65c131730>, FiniteElement('Discontinuous Lagrange', interval, 0), name=None), Mesh(VectorElement(FiniteElement('Discontinuous Lagrange', interval, 1, variant='equispaced'), dim=1, variant='equispaced'), 6)), 0, None), True)) vs conj((Argument(WithGeometry(FunctionSpace(<firedrake.mesh.MeshTopology object at 0x7fe65c131730>, FiniteElement('Discontinuous Lagrange', interval, 0), name=None), Mesh(VectorElement(FiniteElement('Discontinuous Lagrange', interval, 1, variant='equispaced'), dim=1, variant='equispaced'), 6)), 0, None), False)).
../firedrake_venv/src/ufl/ufl/algorithms/check_arities.py:59: ArityMismatch
Check failure on line 1 in tests/firedrake/regression/test_4dvar_reduced_functional.py
github-actions / Firedrake complex
test_4dvar_reduced_functional.test_advection[nprocs=2]
subprocess.CalledProcessError: Command '['mpiexec', '-n', '1', '-genv', '_PYTEST_MPI_CHILD_PROCESS', '1', '/__w/firedrake/firedrake_venv/bin/python', '-m', 'pytest', '--runxfail', '-s', '-q', '/__w/firedrake/firedrake/tests/firedrake/regression/test_4dvar_reduced_functional.py::test_advection[nprocs=2]', ':', '-n', '1', '/__w/firedrake/firedrake_venv/bin/python', '-m', 'pytest', '--runxfail', '-s', '-q', '/__w/firedrake/firedrake/tests/firedrake/regression/test_4dvar_reduced_functional.py::test_advection[nprocs=2]', '--tb=no', '--no-summary', '--no-header', '--disable-warnings', '--show-capture=no']' returned non-zero exit status 1.
Raw output
args = (), kwargs = {}
def parallel_callback(*args, **kwargs):
> subprocess.run(cmd, check=True)
../firedrake_venv/src/pytest-mpi/pytest_mpi.py:240:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
input = None, capture_output = False, timeout = None, check = True
popenargs = (['mpiexec', '-n', '1', '-genv', '_PYTEST_MPI_CHILD_PROCESS', '1', ...],)
kwargs = {}
process = <Popen: returncode: 1 args: ['mpiexec', '-n', '1', '-genv', '_PYTEST_MPI_CHI...>
stdout = None, stderr = None, retcode = 1
def run(*popenargs,
input=None, capture_output=False, timeout=None, check=False, **kwargs):
"""Run command with arguments and return a CompletedProcess instance.
The returned instance will have attributes args, returncode, stdout and
stderr. By default, stdout and stderr are not captured, and those attributes
will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them,
or pass capture_output=True to capture both.
If check is True and the exit code was non-zero, it raises a
CalledProcessError. The CalledProcessError object will have the return code
in the returncode attribute, and output & stderr attributes if those streams
were captured.
If timeout is given, and the process takes too long, a TimeoutExpired
exception will be raised.
There is an optional argument "input", allowing you to
pass bytes or a string to the subprocess's stdin. If you use this argument
you may not also use the Popen constructor's "stdin" argument, as
it will be used internally.
By default, all communication is in bytes, and therefore any "input" should
be bytes, and the stdout and stderr will be bytes. If in text mode, any
"input" should be a string, and stdout and stderr will be strings decoded
according to locale encoding, or by "encoding" if set. Text mode is
triggered by setting any of text, encoding, errors or universal_newlines.
The other arguments are the same as for the Popen constructor.
"""
if input is not None:
if kwargs.get('stdin') is not None:
raise ValueError('stdin and input arguments may not both be used.')
kwargs['stdin'] = PIPE
if capture_output:
if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None:
raise ValueError('stdout and stderr arguments may not be used '
'with capture_output.')
kwargs['stdout'] = PIPE
kwargs['stderr'] = PIPE
with Popen(*popenargs, **kwargs) as process:
try:
stdout, stderr = process.communicate(input, timeout=timeout)
except TimeoutExpired as exc:
process.kill()
if _mswindows:
# Windows accumulates the output in a single blocking
# read() call run on child threads, with the timeout
# being done in a join() on those threads. communicate()
# _after_ kill() is required to collect that and add it
# to the exception.
exc.stdout, exc.stderr = process.communicate()
else:
# POSIX _communicate already populated the output so
# far into the TimeoutExpired exception.
process.wait()
raise
except: # Including KeyboardInterrupt, communicate handled that.
process.kill()
# We don't call process.wait() as .__exit__ does that for us.
raise
retcode = process.poll()
if check and retcode:
> raise CalledProcessError(retcode, process.args,
output=stdout, stderr=stderr)
E subprocess.CalledProcessError: Command '['mpiexec', '-n', '1', '-genv', '_PYTEST_MPI_CHILD_PROCESS', '1', '/__w/firedrake/firedrake_venv/bin/python', '-m', 'pytest', '--runxfail', '-s', '-q', '/__w/firedrake/firedrake/tests/firedrake/regression/test_4dvar_reduced_functional.py::test_advection[nprocs=2]', ':', '-n', '1', '/__w/firedrake/firedrake_venv/bin/python', '-m', 'pytest', '--runxfail', '-s', '-q', '/__w/firedrake/firedrake/tests/firedrake/regression/test_4dvar_reduced_functional.py::test_advection[nprocs=2]', '--tb=no', '--no-summary', '--no-header', '--disable-warnings', '--show-capture=no']' returned non-zero exit status 1.
/usr/lib/python3.12/subprocess.py:571: CalledProcessError
Check failure on line 1 in tests/firedrake/regression/test_4dvar_reduced_functional.py
github-actions / Firedrake complex
test_4dvar_reduced_functional.test_advection[nprocs=3]
failed on setup with "worker 'gw7' crashed while running 'tests/firedrake/regression/test_4dvar_reduced_functional.py::test_advection[nprocs=3]'"
Raw output
worker 'gw7' crashed while running 'tests/firedrake/regression/test_4dvar_reduced_functional.py::test_advection[nprocs=3]'
Check failure on line 1 in tests/firedrake/regression/test_4dvar_reduced_functional.py
github-actions / Firedrake complex
test_4dvar_reduced_functional.test_advection[nprocs=4]
failed on setup with "worker 'gw12' crashed while running 'tests/firedrake/regression/test_4dvar_reduced_functional.py::test_advection[nprocs=4]'"
Raw output
worker 'gw12' crashed while running 'tests/firedrake/regression/test_4dvar_reduced_functional.py::test_advection[nprocs=4]'