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Moving meshes final#431

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jshipton wants to merge 37 commits intomainfiredrakeproject/gusto:mainfrom moving_meshes_finalfiredrakeproject/gusto:moving_meshes_finalCopy head branch name to clipboard

+923-14

Commits

Commits on Feb 16, 2023

• first attempt at mesh movement timeloop

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  0789602

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• progress: moving mesh Galewsky script runs and produces an adapted initial mesh

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  a9f390a

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• Progress: runs but is blowing up. Much tidying needed

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Commits on Feb 24, 2023

• oops, forgot these files

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Commits on Mar 9, 2023

• hack circulation form a bit for now

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  f8e282d

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• oops, I forgot that the vector_invariant_form already included a grad(usq) term

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  756be5e

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Commits on Mar 18, 2023

• fix minus sign

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  d90fb4d

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• a couple of hard coded constant_jacobian=False args

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Commits on May 17, 2023

• Merge branch 'main' of https://github.com/firedrakeproject/gusto into moving_meshes_final

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Commits on May 18, 2023

• these LVPs need constant_Jacobian=False

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  905e417

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• some fixes to setup script

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Commits on Jun 6, 2023

• IT WORKS!

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  54b1f05

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Commits on Jun 15, 2023

• remove debugging prints from timeloop

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  34305f0

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• remove another debugging print

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  782ade1

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• tidy code and fix memory issues

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  164c31a

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Commits on Jun 19, 2023

• enable adapting to field

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  04569b0

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• put some info in the directory name

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Commits on Aug 24, 2023

• remove factor of a half

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  4ce1683

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• refactor mesh movement timeloop so that the new mesh is only computed once and the transport step on the old mesh is done outside of the iteration

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  71bcb2a

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• Merge branch 'main' of https://github.com/firedrakeproject/gusto into moving_meshes_final

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  166d2b2

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• fix import error related to merge

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  cd0232f

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• fix some lint

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  af283f9

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• tiny lint fix

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  f9ee380

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Commits on Aug 25, 2023

• get perp from the right place - not sure how this works on main!

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  e2451b1

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• removing hack to set up diagnostics earlier as this breaks tests

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  5f5b6a1

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• I think this fixes the tests but might break mesh movement - check sign of ke term!!

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  2c36527

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• more lint fixing

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  40e9116

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• more fixes for merge with main

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  389bde7

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• I think this works with the new definition of the transport forms

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Commits on Aug 26, 2023

• make solver non-convergence warning go to logger

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  809ceed

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• fix linting of moving mesh example file

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  dda98e9

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• not quite sure how this worked without the definition of the ke_form

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  2d9807d

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• Merge branch 'main' into moving_meshes_final

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  5c09458

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• don't kill the testing by adding a stupidly long example without the test-specific check at the top

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  17a7b5d

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• Merge branch 'moving_meshes_final' of https://github.com/firedrakeproject/gusto into moving_meshes_final

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Commits on Aug 27, 2023

• import sys to fix running moving mesh example through pytest

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  473d872

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• set up cubed sphere galewsky with moving mesh

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