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@fischuu fischuu released this 03 Nov 16:47
· 191 commits to main since this release
0.10
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Learn about vigilant mode.

0.8.16: * Added a docker samtools container for the variant calling for existing mock and variant loci
0.8.15: * Case handling when some samples hardly have any variants called
0.8.14: * Error handling for the case that some mock clusters have no reads aligned to
0.8.13: * DOS encoding does not affect the GBS-perl script 4 anymore
0.8.12: * The minimum sample size can now be smaller than 6 for the final report
0.8.11: * The visualisation of the vcf work now smoothly, also if not all alleles for a genotypes are present
0.8.10: * Critical bugfix: vcf-barplot in finalReport.Rmd threw an error for larger datasets
0.8.9 : * ICS visualisation uses now the Scores S4 object to plot.
0.8.8 : * "final reads per coverage group"-rule handles now also empty groups
0.8.7 : * Increased the memory for minimap2 from 4G (default) to 8G and added the --split-prefix=tmp option. TODO: This could be also an option in the configuration file
0.8.6 : * Log files for several rules upgraded
0.8.5 : * Reaining bai indices changed to csi indices
0.8.4 : * Bugfix: If flanking site is in the first six bases of a cluster the script threw an error
0.8.3 : * Missingness vs Seq depth added (NOT AS GENERAL CODE!!!)
0.8.2 : * Improved visualisation of vcf
0.8.1 : * Bugfix: Flanking site frequencies are now properly merged and counted

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