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@fish-quant

FISH-quant

Analysis of smFISH images.

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  1. big-fish big-fish Public

    Toolbox for the analysis of smFISH images.

    Python 59 19

  2. big-fish-examples big-fish-examples Public

    Notebooks to illustrate how BigFISH is working.

    Jupyter Notebook 13 8

  3. autofish autofish Public

    Python code to control automated iterative FISH system

    Python 4

  4. ComSeg ComSeg Public

    comseg

    Python 19 3

Repositories

Showing 10 of 13 repositories
  • pipelines_apiFISH Public
    fish-quant/pipelines_apiFISH’s past year of commit activity
    0 0 0 0 Updated Feb 27, 2025
  • rna2seg Public

    rna2seg

    fish-quant/rna2seg’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Feb 24, 2025
  • ComSeg Public

    comseg

    fish-quant/ComSeg’s past year of commit activity
    Python 19 MIT 3 3 0 Updated Feb 6, 2025
  • autofish Public

    Python code to control automated iterative FISH system

    fish-quant/autofish’s past year of commit activity
    Python 4 MIT 0 7 0 Updated Jan 22, 2025
  • autofish-analysis Public
    fish-quant/autofish-analysis’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Nov 7, 2024
  • tutorial_gene_selection Public
    fish-quant/tutorial_gene_selection’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 28, 2024
  • big-fish Public

    Toolbox for the analysis of smFISH images.

    fish-quant/big-fish’s past year of commit activity
    Python 59 BSD-3-Clause 19 15 2 Updated Oct 31, 2023
  • fq-segmentation Public

    Wrapper code for segmentation of cells and nuclei with Cellpose.

    fish-quant/fq-segmentation’s past year of commit activity
    Python 2 BSD-3-Clause 2 2 1 Updated Jul 19, 2023
  • fq-imjoy Public

    ImJoy plugins to run different smFISH analysis in a user-friendly setting.

    fish-quant/fq-imjoy’s past year of commit activity
    HTML 2 MIT 2 15 0 Updated Mar 8, 2023
  • sim-fish Public

    Toolbox to simulate smFISH images.

    fish-quant/sim-fish’s past year of commit activity
    Python 7 BSD-3-Clause 1 1 0 Updated Sep 5, 2022
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