Skip to content
@flatironinstitute

Flatiron Institute

Popular repositories Loading

  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 659 379

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 342 86

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 320 83

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 256 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 150 95

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 120 22

Repositories

Showing 10 of 194 repositories
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 95 MIT 9 113 (3 issues need help) 3 Updated May 5, 2025
  • slurm Public Forked from SchedMD/slurm

    Slurm: A Highly Scalable Workload Manager

    flatironinstitute/slurm’s past year of commit activity
    C 1 707 0 0 Updated May 3, 2025
  • jax-finufft Public

    JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

    flatironinstitute/jax-finufft’s past year of commit activity
    Python 91 Apache-2.0 3 6 (1 issue needs help) 0 Updated May 3, 2025
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 342 86 44 (3 issues need help) 7 Updated May 2, 2025
  • disBatch Public

    Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.

    flatironinstitute/disBatch’s past year of commit activity
    Python 45 Apache-2.0 9 7 0 Updated May 1, 2025
  • Cryo-EM-Heterogeneity-Challenge-1 Public

    The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

    flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1’s past year of commit activity
    Jupyter Notebook 8 MIT 0 27 5 Updated May 1, 2025
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 57 Apache-2.0 10 25 1 Updated May 1, 2025
  • lineage_viewer Public

    Graphical interface for editing a lineage and viewing related microscopy images

    flatironinstitute/lineage_viewer’s past year of commit activity
    Python 1 BSD-3-Clause 1 7 0 Updated May 1, 2025
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 42 Apache-2.0 1 11 1 Updated May 1, 2025
  • nifty-ls Public

    A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!

    flatironinstitute/nifty-ls’s past year of commit activity
    Python 41 Apache-2.0 3 4 0 Updated May 1, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…