mock: fix bug making Fastqs in MockAnalysisProject, when lane not spe…

…cified.
fls-bioinformatics-core · Nov 25, 2023 · cc784b2 · cc784b2
1 parent d78b7bf
commit cc784b2
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/auto_process_ngs/mock.py b/auto_process_ngs/mock.py
@@ -461,6 +461,8 @@ def create(self,top_dir=None,readme=True,scriptcode=True,
             if populate_fastqs:
                 read_number = AnalysisFastq(fq).read_number
                 lane = AnalysisFastq(fq).lane_number
+                if lane is None:
+                    lane = 1
                 read = """@ILLUMINA-545855:49:FC61RLR:%s:1:10979:1695 %s:N:0:TCCTGA
 GCATACTCAGCTTTAGTAATAAGTGTGATTCTGGTA
 +