Implement new auto-process 'info' command #895
Merged
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Implements a new
info
command withinauto_process.py
, as a lightweight alternative to using themetadata
andparams
commands to get information about the current analysis directory.Information to include:
(The PR includes updates to the
setup
command internals, to acquire and store a newrun_configuration
metadata item which describes the reads and numbers of bases determined from theRunInfo.xml
file of the sequencing run (e.g.R1:101bp, I1:8bp, I2:8bp, R2:101bp
). The run configuration is generated by a new functionget_run_config
, in thebcl2fastq/utils
module.)